Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0039 ATGCTTGATCATAGTCTATCTGTCTGTCCTGTgtggtattattattttaataataataatatgcacTCATCCATTTGCCTTATTAAATTGTCTATGTTGGCGTCTGAagccaaaccaaaccaaaccaaacataaCGTGCAGCCGAGTATTTACTCAACGGCAGCTAGCTACTTAAGTCAGTGGAGTAGTGGAAAGAGATCCGTACGGAGAAAACGAGATCGGAGAACGATGAGCAGCAACAACAAGAACGTTGGACAGTTTGGGGACACGACGCTGACCAAAGTGTTTGTGGGAGGGCTAGCCTGGGAGACTCAGAAAGAGACATTGAGAGAGCACTTTGAAAATTTCGGTGAGATCCTTGAGGCCGTCATCATTTCCGATAAGCTCACCGGCAGATCCAAAGGCTACGGCTTTgtaACGTTCAAGGAAGCTGAGGCGGCGAAGAAGGCTTGCGAGGATCCAAGTCTGATTATCAATGGGCGCAGAGCCAACTGCAATCTGGCATCGCTGGGTGCACGGCGTCCAAGGTCTTCTTCCACCACTTCACCTCCACAAACACAACAAGTGGCAGGTGGAGGAATCAGGAACGCCAATCAGGTCCAGTGGTATTATCCCCTGGGAACTCCCGCACCTGCTTCCCCATTCCATCATCACCCATTTCCTTTGTACACACCCACTTACATTGCGACGGACataaattacaattacaatcaGAAGCTGAGCTACGGAAGCGGTGGGGGCTACATGAATGGGCATGTGTACACAAGCCAGGCTATTGTGGGTGCGAATACATTGATGCCAATGTACCCTCCTGTCTACCACTTCCACCGAACCGAGACAACGGGTGTGCCTGCCCACATCTTCCACCCATTTTGCCACACTGCTAGTGCTCCCATCCATCACTCCTAA 909 0.4664 MLDHSLSVCPVWYYYFNNNNMHSSICLIKLSMLASEAKPNQTKHNVQPSIYSTAASYLSQWSSGKRSVRRKRDRRTMSSNNKNVGQFGDTTLTKVFVGGLAWETQKETLREHFENFGEILEAVIISDKLTGRSKGYGFVTFKEAEAAKKACEDPSLIINGRRANCNLASLGARRPRSSSTTSPPQTQQVAGGGIRNANQVQWYYPLGTPAPASPFHHHPFPLYTPTYIATDINYNYNQKLSYGSGGGYMNGHVYTSQAIVGANTLMPMYPPVYHFHRTETTGVPAHIFHPFCHTASAPIHHS 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0039 302 SUPERFAMILY RNA-binding domain, RBD 88 194 IPR035979 GO:0003676
Ssu4g0039 302 CDD RRM_RBM24_RBM38_like 93 168 - -
Ssu4g0039 302 Gene3D - 36 183 IPR012677 -
Ssu4g0039 302 PANTHER GEO13361P1-RELATED 81 296 - -
Ssu4g0039 302 MobiDBLite consensus disorder prediction 63 84 - -
Ssu4g0039 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 152 IPR000504 GO:0003723
Ssu4g0039 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 170 IPR000504 GO:0003723
Ssu4g0039 302 PANTHER RNA-BINDING PROTEIN ARP1-RELATED 81 296 - -
Ssu4g0039 302 MobiDBLite consensus disorder prediction 172 191 - -
Ssu4g0039 302 SMART rrm1_1 94 166 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0039 Ssu-Chr4 724572 726429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0039 89 229 C2H2 Transcription Factor Family AT2G19380 31.902 1.08e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0039 - - lang:109337745 282.722