Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0038 ATGGCTGAGGAACTGGATAAACCTTTGCTTGATCCTGAGAATTTCAACCGAGAGGGCATTGACTTGGAGCGTATACCATTAGAAGAAGTATTTGAACAGTTGAGAACATCAAGAAGAGGACTTTCATCTGATGATGCTGAAGCCCGAATACAGATATTTGGCCCAAACAAACTTGAAGAGAAGAAAgagaataaaatattgaaatttcttaGTTTTATGTGGAATCCTCTGTCATGGGTTATGGAAGCAGCAGCATTGATGGCTATTATCCTTGCTAATGGCGGAGTGAGTAGAGAACATAATCATTGTTCTTCAAATATATGA 324 0.3704 MAEELDKPLLDPENFNREGIDLERIPLEEVFEQLRTSRRGLSSDDAEARIQIFGPNKLEEKKENKILKFLSFMWNPLSWVMEAAALMAIILANGGVSREHNHCSSNI 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0038 107 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 92 IPR023298 -
Ssu4g0038 107 SMART Cation_ATPase_N_a_2 21 93 IPR004014 -
Ssu4g0038 107 Gene3D - 72 107 - -
Ssu4g0038 107 Pfam Cation transporter/ATPase, N-terminus 25 87 IPR004014 -
Ssu4g0038 107 PANTHER ATPASE 10, PLASMA MEMBRANE-TYPE 1 96 - -
Ssu4g0038 107 PANTHER CALCIUM-TRANSPORTING ATPASE 1 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0038 Ssu-Chr4 710070 711560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0038 1 82 Primary Pumps ATPases AT1G17260 74.390 1.47e-39 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0038 K01535 - gmx:100795836 171.014