Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0037 ATGCTCTTCTGCGTTTTCATTCAAcatttactttttagtttttattttcatttcttgattccttattttgagagaaattttCAGGGGGAGGGTCCTGATTGGCAAGACTTTATAGGGATCATATGCCTACTGGTAATAAACTCAACTATTAgttttatagaagaaaataatgcaGGTAATGCTGCAGCAGCACTAATGGCTCATTTAGCTCCAAAAACAAGGGTTCTCAGAGATGGGCAGTGGCAAGAGCAAGATGCAGCTATTTTAGTACCTGGAGATATAATTAGCATAAAGCTGGGAGATATAATTCCAGCTGATGCTCGCTTGCTAGAAGGGGACCCTCTAAAAATTGACCAGTCAGCCCTTACTGGAGAATCTCTACCCGTCACAAAGAGAACCGGTGATGAGGTCTTTTCAGGTTCAACATGTAAACACGGAGAGATTGAAGCAGTAGTGATAGCAACAGGAGTTCACTCCTTTTTTGGAAAGGCAGCATACCTAGTTGACATTACCGAAGTTGTTGGACATTTTCAGAAGGTCCTTACCGCAATTGGTAACTTCTGCATTTGCTCTATAGCTATAGGGAtggtttttgaaataattataatgttcGCAGTGGAGCATCGATCATACAGGGATGGAATCAACAACCTTCTTGTTCTCCTAATTGGAGGAATACCCATCGCTATGCCAACAGTATTATCTGTAACACTTGCAATTGGCTCTCATCGTCTTTCTCAGCAGGGAGCTATCACAAAAAGAATGACAGCAATTGAAGAAATGGCAGGCATGGATGTCCTATGCAGTGACAAAACTGGAACTCTTACACTGAATAGCCTGACTGTTGATCGAAACCTTATTGAGGTCTTTAACAGAAATATGGACAAGGATACGGTTATTCTACTAGCAGCCAGAGCAGCTAGACTGGAAAACCAGGATGCCATTGATACTGCCATAGTTAATATGCTAGCTGATCCAAAGGAGGCACGTGCAAACATCACTGAAGTTCATTTTTTACCATTCAATCCTGTAGATAAACGTACAGCTATAACATATATTGATTCTGATGGCAATTATCATAGGGCCAGTAAAGGAGCTCCGGAACAGATTCTAGATTTGTGTCAAGAGAAAGACCAGATTGCCAAAAAAGTGCAcactataatagaaaaatttgctGAAAGGGGCTTGCGATCTCTTGCAGTTGCTTATCAGGAAGTTCCTGAAAAATCCAAGGATAGCCCTGGAGGTCCTTGGACTTTTTGTGGTTTGTTGCCTTTGTTTGATCCGCCAAGACATGATAGTGCCGAGACCATCCGAAGAGCACTTAACCTTGGCGTCTGTGTTAAGATGATTACAGGTGATCAATTAGCAATTGCAAAGGAGACAGGCCGTAGACTTGGTATGGGAACAAACATGTACCCTTCTTCATCTTTGTTGGGTCGCGACAAAGATGAGAATGAAGCTCTCCCTGTAGACGAGCTCGTTGAAATGGCAGATGGCTTTGCTGGTGTATATCCTGGTATATGGATttga 1533 0.3973 MLFCVFIQHLLFSFYFHFLIPYFERNFQGEGPDWQDFIGIICLLVINSTISFIEENNAGNAAAALMAHLAPKTRVLRDGQWQEQDAAILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKRTGDEVFSGSTCKHGEIEAVVIATGVHSFFGKAAYLVDITEVVGHFQKVLTAIGNFCICSIAIGMVFEIIIMFAVEHRSYRDGINNLLVLLIGGIPIAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNSLTVDRNLIEVFNRNMDKDTVILLAARAARLENQDAIDTAIVNMLADPKEARANITEVHFLPFNPVDKRTAITYIDSDGNYHRASKGAPEQILDLCQEKDQIAKKVHTIIEKFAERGLRSLAVAYQEVPEKSKDSPGGPWTFCGLLPLFDPPRHDSAETIRRALNLGVCVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGRDKDENEALPVDELVEMADGFAGVYPGIWI 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0037 510 Pfam haloacid dehalogenase-like hydrolase 264 470 - -
Ssu4g0037 510 PRINTS H+-transporting ATPase (proton pump) signature 384 402 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g0037 510 PRINTS H+-transporting ATPase (proton pump) signature 498 510 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g0037 510 PANTHER CALCIUM-TRANSPORTING ATPASE 26 507 - -
Ssu4g0037 510 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 274 433 IPR023299 GO:0000166
Ssu4g0037 510 SUPERFAMILY HAD-like 264 470 IPR036412 -
Ssu4g0037 510 PRINTS P-type cation-transporting ATPase superfamily signature 118 132 - -
Ssu4g0037 510 PRINTS P-type cation-transporting ATPase superfamily signature 422 433 - -
Ssu4g0037 510 PRINTS P-type cation-transporting ATPase superfamily signature 444 454 - -
Ssu4g0037 510 PRINTS P-type cation-transporting ATPase superfamily signature 268 282 - -
Ssu4g0037 510 PANTHER ATPASE 10, PLASMA MEMBRANE-TYPE 26 507 - -
Ssu4g0037 510 SUPERFAMILY Calcium ATPase, transmembrane domain M 10 262 IPR023298 -
Ssu4g0037 510 ProSitePatterns E1-E2 ATPases phosphorylation site. 270 276 IPR018303 -
Ssu4g0037 510 Gene3D - 280 427 IPR023299 GO:0000166
Ssu4g0037 510 SUPERFAMILY Calcium ATPase, transduction domain A 71 167 IPR008250 -
Ssu4g0037 510 Gene3D - 71 155 - -
Ssu4g0037 510 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 33 506 IPR006534 GO:0008553|GO:0016021|GO:0120029
Ssu4g0037 510 Pfam E1-E2 ATPase 69 247 - -
Ssu4g0037 510 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 40 288 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g0037 510 Gene3D - 265 506 IPR023214 -
Ssu4g0037 510 Gene3D - 33 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0037 Ssu-Chr4 705557 710068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0037 26 506 Primary Pumps ATPases AT1G17260 83.992 0.0 819
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0037 K01535 - gmx:100795836 898.271