Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0036 ATGACTGGGGATGGAGTAAATGATGCCCCAGCATTGAAGAAAGCAGATATCGGAATAGCTGTGTCAGATGCTACAGATGCTGCAAGAAGTGCTGCTGATCTGGTCTTAACCGAGCCTGGCTTAAGTGTGATTATTAGTGCTGTGTTAACTAGCAGAGCTATATTCCAAAGAATGAAAAACTATACAATATATGCAGTCTCCATCACCATAAGGATAGTGCTTGGTTTTACTCTCCTAGCGTTGATTTGGGAGTATGATTTTCCACCCTTCATGGTCCTGATCATTGCAATACTAAATGATGgtaCCATCATGACCATATCTAAAGACAGAGTGAAGCCATCCCCAACACCTGACAGTTGGAAGCTGCCGGAGATATTTGCAACAGGAATCGTCATTGGCACTTATCTCGCTTTGGTTACCGTTCTGTTCTACTGGGCAATAGTTGAGACCACTTTCTTTGAGACCCACTTCTATGTAACCTCCTTATCTAGCGACACCGAGAAAGTTTCATCTGCTGTATATCTGCAAGTCAGCATCATTAGCCAGGCTCTAATTTTTGTTACTCGTAGCCGTAGTTGGTCATTTCTAGAGAGGCCTGGTGTTCTACTGATGTGTGCCTTTATAATAGCTCAACTGGTAATGCTACACATACAGATGTAG 660 0.4273 MTGDGVNDAPALKKADIGIAVSDATDAARSAADLVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFTLLALIWEYDFPPFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLPEIFATGIVIGTYLALVTVLFYWAIVETTFFETHFYVTSLSSDTEKVSSAVYLQVSIISQALIFVTRSRSWSFLERPGVLLMCAFIIAQLVMLHIQM 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0036 219 Pfam haloacid dehalogenase-like hydrolase 3 37 - -
Ssu4g0036 219 PRINTS H+-transporting ATPase (proton pump) signature 2 18 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g0036 219 PRINTS H+-transporting ATPase (proton pump) signature 174 195 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g0036 219 PRINTS H+-transporting ATPase (proton pump) signature 33 58 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g0036 219 PRINTS P-type cation-transporting ATPase superfamily signature 25 37 - -
Ssu4g0036 219 PRINTS P-type cation-transporting ATPase superfamily signature 2 21 - -
Ssu4g0036 219 PANTHER ATPASE 10, PLASMA MEMBRANE-TYPE 1 215 - -
Ssu4g0036 219 SUPERFAMILY HAD-like 1 58 IPR036412 -
Ssu4g0036 219 SUPERFAMILY Calcium ATPase, transmembrane domain M 51 217 IPR023298 -
Ssu4g0036 219 Gene3D - 40 217 - -
Ssu4g0036 219 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 1 86 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g0036 219 Gene3D - 1 39 IPR023214 -
Ssu4g0036 219 PANTHER CALCIUM-TRANSPORTING ATPASE 1 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0036 Ssu-Chr4 703318 705005 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0036 1 212 Primary Pumps ATPases AT1G17260 86.792 1.15e-126 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0036 K01535 - gmx:100795836 391.349