Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0035 ATGGTGGAGCTTCGAAGGTTGCTGCTGTTGCTGTGCATCACCACCTGCATTCTTCGTTGGATGCCCAATGGTGCTACTGCCGCCACAGATCCAACTGATGCTGCTACTGTGagatttttgtttcaaaatatgaaCTCACCATCCCAGCTAGGTTGGCCTGCTAACGGTGATGATCCATGTGGACAGTCTTGGAAAGGCATTACTTGCTCAGGCAACCGTGTTACAGAGATTAAGTTATCTAATCTTGGACTAACTGGAACATTGCCTTACGGATTACAAGCCCTGTCATCTTTGACCGACCTAGACATGAGTAGCAACACTCTTGGAGGCGCCATACCTTACCAACTTCCTCCAAATGTGCAGCGCTTAAATCTTGCTTTTAATAACATCACTGGGACAGTCCCTTACTCTATTTCTAACTTGACATCTCTTACAGTCCTGAATCTTGGTCACAATCAGCTCCAGCAAGGACTGGCTGTTGACTTTCAAAATCTTACTACCCTCTCCAAATTGGATCTCTCCTTCAATTCTCTAACAGGTGACCTCCCTCAGACTATGAGCTCACTTTCAAGCATAACCACCATGTATCTACAAAATAACCAGTTTACAGGCACTATTGATGTCCTTGCTAATCTGCCTCTGGATAATCTGAATGTGGAAAACAATCATTTTACAGGATGGATACCGGAACAGTTGAAGAACATAAATCTACAGACTGGTGGTAATACGTGGAGCTCAGGGCCTGCACCCCCACCACCTCCTGGGATACCTCTAGCGCCTAAAAGCAACCATCACCACAAGTCTGGTGGTGGAAGCACCACCCCCTCAGATGCTGGTAGTGGCAGCAGCTCAGTTGATGAGGGCAAAAAATCTGGTATAGGAGGTGGCGTCATAGCTGGAATTGCGATCTCTGTCATAGTTGTGGGGGCAATAGTAGCATTCTTTCTGGTGAAGAGAAAATCCAAGAAGTCATCTTCAGATTTAGAAAAGCTGGACAATCAGTCCTTCGCTCCACTTCCTTCAAATGAAGTGCACGAAGAAAAGTCTGTGCAAACTTCCTCTGTAATTGACTTGAAGATGTTTGATACTTCTGCCTCAATAAATCTTAAACCCCCACCTATTGATCGTCATAAATCATTTGATGAAGAAGAATTCTCCAAGAAGCCGATAATTGTGAAGAAGACTGTAACGGCTCCTGCAAATGTGAAATCATATTCTATTGCTGAACTGCAGATTGCTACTGGCAGCTTCAGTATGGATCACCTTGTTGGTGAGGGGTCTTTTGGGCGTGTGTACCGTGCTCAATTTGATGATGGACAGGTTCTTGCAGTGAAGAAGATAGATTCATCTGTCCTTCCCAATGATTTGTCTGATGATTTTCTAGAAATAGTTTCAAACATCTCCAATTTACATCATCCAAATGTGACAGAGCTTGTAGGTTATTGCTCAGAGTATGGACAACACCTCTTGGTCTATGAGTTTCATAAAAATGGATCACTGCATGACTTTCTTCACCTATCAGATGAATATAGTAAACCATTGATATGGAATTCCCGTGTCAAGATTGCTTTGGGGACTGCACGTGCTTTAGAGTACCTACATGAAGTTAGTTTGCCATCAGTTGTTCATAAGAATATTAAATCAGCCAACATATTGCTTGATGCAGAGCTTAATCCTCATCTTTCAGATAGTGGATTGGCAAGTTATATTCCAAAAGCAGACCAGATATTGAACCATAATGTTGGATCTGGATATGATGCACCTGAAGTTGCCTTGTCTGGTCAGTATACTTTAAAAAGTGATGTCTACAGCTTTGGAGTTGTCATGTTGGAACTTCTCAGTGGACGGAAACCATTTGATAGCTCAAGGCCACGAACTGAGCAGTCGTTGGTTCGATGGGCAACACCTCAACTCCATGATATTGATGCATTGGCTAAAATGGTTGATCCTGCACTGAAAGGGCTATATCCTGTTAAGTCTCTTTCTCGATTTGCCGATGTTATTGCTCTTTGCGTTCAGCCGGAGCCTGAATTCCGACCACCTATGTCAGAAGTGGTTCAAGCACTGGTACGATTAGTGCAGCGAGCTAACATGAGCAAGCGAACATTTAGTAGTAGTGATCATGGAGGATCCCATCGAGGGAGTGATGAGCCAGTTCTACGGGACATCTAA 2172 0.4337 MVELRRLLLLLCITTCILRWMPNGATAATDPTDAATVRFLFQNMNSPSQLGWPANGDDPCGQSWKGITCSGNRVTEIKLSNLGLTGTLPYGLQALSSLTDLDMSSNTLGGAIPYQLPPNVQRLNLAFNNITGTVPYSISNLTSLTVLNLGHNQLQQGLAVDFQNLTTLSKLDLSFNSLTGDLPQTMSSLSSITTMYLQNNQFTGTIDVLANLPLDNLNVENNHFTGWIPEQLKNINLQTGGNTWSSGPAPPPPPGIPLAPKSNHHHKSGGGSTTPSDAGSGSSSVDEGKKSGIGGGVIAGIAISVIVVGAIVAFFLVKRKSKKSSSDLEKLDNQSFAPLPSNEVHEEKSVQTSSVIDLKMFDTSASINLKPPPIDRHKSFDEEEFSKKPIIVKKTVTAPANVKSYSIAELQIATGSFSMDHLVGEGSFGRVYRAQFDDGQVLAVKKIDSSVLPNDLSDDFLEIVSNISNLHHPNVTELVGYCSEYGQHLLVYEFHKNGSLHDFLHLSDEYSKPLIWNSRVKIALGTARALEYLHEVSLPSVVHKNIKSANILLDAELNPHLSDSGLASYIPKADQILNHNVGSGYDAPEVALSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRTEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRANMSKRTFSSSDHGGSHRGSDEPVLRDI 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0035 723 ProSitePatterns Protein kinases ATP-binding region signature. 423 446 IPR017441 GO:0005524
Ssu4g0035 723 MobiDBLite consensus disorder prediction 701 723 - -
Ssu4g0035 723 MobiDBLite consensus disorder prediction 706 723 - -
Ssu4g0035 723 PANTHER OS01G0253100 PROTEIN 23 717 IPR045271 GO:0004714|GO:0006468
Ssu4g0035 723 Gene3D Ribonuclease Inhibitor 183 246 IPR032675 -
Ssu4g0035 723 Pfam Protein tyrosine and serine/threonine kinase 419 689 IPR001245 GO:0004672|GO:0006468
Ssu4g0035 723 Gene3D Phosphorylase Kinase; domain 1 379 494 - -
Ssu4g0035 723 MobiDBLite consensus disorder prediction 327 348 - -
Ssu4g0035 723 PANTHER STRUBBELIG-RECEPTOR FAMILY 6 PROTEIN 23 717 - -
Ssu4g0035 723 Gene3D Transferase(Phosphotransferase) domain 1 496 710 - -
Ssu4g0035 723 MobiDBLite consensus disorder prediction 266 287 - -
Ssu4g0035 723 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Ssu4g0035 723 SUPERFAMILY Protein kinase-like (PK-like) 399 689 IPR011009 -
Ssu4g0035 723 MobiDBLite consensus disorder prediction 238 288 - -
Ssu4g0035 723 Gene3D Ribonuclease Inhibitor 40 182 IPR032675 -
Ssu4g0035 723 MobiDBLite consensus disorder prediction 330 348 - -
Ssu4g0035 723 ProSiteProfiles Protein kinase domain profile. 417 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0035 723 SUPERFAMILY L domain-like 30 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0035 Ssu-Chr4 669382 677543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0035 8 702 Strubbelig Receptor Gene Family AT1G53730 66.952 0.0 864
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Ssu4g0035 PK_Tyr_Ser-Thr 2.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0035 - - gmx:100807707 1250.34