Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0030 ATGGATGACTCGTCGGCGCCAAGTGACAAATTGGGTGAATCCCCGGCCGTGGAGGTTACCGGAAAGATAATGGTGGTGATTATCATAATCATGTTCTTCGTTGTTGTAATTGCTCTCTGCCTCCATCTCTTTGCCAGAGGCTTCTGGTGGCGCGACACTACCCTCCAATCTCGGAGCAGCCGCCGCCGCGGCCGCCGCTTTGTGTTTTCGTCCGGTGAAGACGGTGCTCTTCGAACCGGACTGGATCCCTCCGTCCTGAGCTCCCTACCCGTGTTGGTATTCGAAGCCAAAGACTTCAAGGATGGTTTGGAGTGCGCGGTTTGCCTCTCGGAGGTTGTTGAAGGAGAGAAGGCTAGGCTTTTGCCTAAATGCAATCATGGGTTTCACGTTGATTGTATTGACATGTGGTTCCAATCCCATTCTACCTGCCCTCTCTGCAGGAACCCTGTTGCCTCCTCAAACTCAAACTCAAATGATAACTCAGAATCAGAATCTCCAACTTTTCCCACCAACGTCTTGGTTTGGGGGGACCACACCCAAATAAGTTCCACCGGTGGTGGTGCTGCTTTGGAATTGGAGGAAGGTGCTTCTCAGCCACCTTGCTCCTCTTCCGCGGGTGACGATAATAATAGACGTCATGGAACGTTGGTCATTGATATACCAAGTGAGATCACTTCAACCTCTTTATCGCCTTCCGCAAGCAGGTTTGCTGAAGATGACCTCAAGTCTCCAATGACGGGAAGACTGAGGTCACTGAAGAGGCTTTTGAGCAGGGACAGAAGGTTAAATCCTTGGAGTCCTACTTCTGCAGATGTAGAGCAACCAGCGTCAGGTTCAGGACACACCTGA 849 0.5124 MDDSSAPSDKLGESPAVEVTGKIMVVIIIIMFFVVVIALCLHLFARGFWWRDTTLQSRSSRRRGRRFVFSSGEDGALRTGLDPSVLSSLPVLVFEAKDFKDGLECAVCLSEVVEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNPVASSNSNSNDNSESESPTFPTNVLVWGDHTQISSTGGGAALELEEGASQPPCSSSAGDDNNRRHGTLVIDIPSEITSTSLSPSASRFAEDDLKSPMTGRLRSLKRLLSRDRRLNPWSPTSADVEQPASGSGHT 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0030 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 158 IPR013083 -
Ssu4g0030 282 SUPERFAMILY RING/U-box 85 154 - -
Ssu4g0030 282 SMART ring_2 105 146 IPR001841 -
Ssu4g0030 282 PANTHER RING-H2 FINGER PROTEIN ATL3 2 272 - -
Ssu4g0030 282 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Ssu4g0030 282 MobiDBLite consensus disorder prediction 152 171 - -
Ssu4g0030 282 MobiDBLite consensus disorder prediction 193 282 - -
Ssu4g0030 282 MobiDBLite consensus disorder prediction 220 234 - -
Ssu4g0030 282 MobiDBLite consensus disorder prediction 262 282 - -
Ssu4g0030 282 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 272 IPR044675 -
Ssu4g0030 282 CDD RING-H2_EL5_like 104 147 - -
Ssu4g0030 282 MobiDBLite consensus disorder prediction 241 260 - -
Ssu4g0030 282 Pfam Ring finger domain 104 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0030 Ssu-Chr4 625983 626831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0030 1 263 C3H Transcription Factor Family AT1G53820 40.895 2.23e-61 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0030 - - gmx:100797420 329.331