Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0027 ATGACAGACATCAAACAATTAGCCTTTGCCAAAACAAGTGATTACTTGTtgaagaagaacaagaagaagcTCTTCTTGTCTCTCCTCGCTACCTTGCTTCTTGTGGGAGCTCAGCCCAGAACTCTGCTTTTCATCCATACTACCTCTGAACCTCCTCACGTCACCGACAAAGTTTTCTCCCACAGAGATGTCATACAGTTGGCACTCAACATTACCTACAAGTATGTTCAGCGCAATTACCTTGTTGTGGAGAAGCTCTTAACCCGAAAGGGTCTCAGCAAGAGAGTCAAAAATGCCCTCCACGATTGCTTGGAAACCATTGACGACACACTGGACGACATTACCAAAGCCAAGAAGGACCTCGAAGATTACCCATCAGAGAAGAAGTCTCTATATGAGTATGCTGATGACCTTAAAACGCTCATCAGCTCCGCCATAACAAACCAGGTTACTTGCTTGGAAGAGTTCTCTCATCAGAAGTCTGAGAAGCGCTTCAGGGAACTATATCTGCGGAAAGGGCAAGAACACGTGCAGCACTTGTGTAGCAACGCATTGGCTATGACCAAGAACCTCGCTGACACTGACATAGCCATTCACGAGATGGAGAGGAAACTGGTGGAGGAGGATGGGATCAAGTGGCCGGAGTGGATTTCCGCGGCGGACAGGCGGCTTCTGCAGACGGGTACGGTGACTCCTGacgtggtggtggcggcggacGGCAGCGGGAACTACAGGACAGTGTCAGCTGCGGTGGATGCGGCTCCTGAGAGGAGTAGCAAGAGATATGTTGTTAGGATCAAAGCAGGAGTGTACAGAGAGAATTTGGATGTGCCAAGGACGAAGACTAACATCATGTTCTTGGGTGAGGATAATAGTAATACTATCATCACAGCTAGAAATGTTGTTGATGGCAGCACAACCTTCGACTCTGCCACAGTGGCCGTAGTGGGTGAAGGATTCTTGGCCAACGGAGTAACGTTCCAGAATGCAGTTGGTCCCTTGAAGCACCAAGCAGTGGCACTAAGAGTTGGAGCTGACCTCTCAGCCTTCTACTTGTGTGGCTTCATAGCGATTGGTGCCACCAAGGACTTACAAGCTGTGAAAGGCAGCTTCCAATCGTTTCTTGGGAGGCCATGGAAGGAATACTCTCATATTGTCATCATGCAATCAAGCATAAGTGATATCATTCACCTCGCTGGGTGGTTTGAGTGGGATGGGGATTTTGCGTTGAATACCTTGTATTATGGGGAATATCACAACACTGGAGCTGGGGCTGACACCTCAAAGAGGGTTAGTTGGAAAGGGTTCAAGGTAATAACTAGTGCCTCCGAGGCCCAAGCATTTACTCCTGGGAATTTCATTGCAGTTTTCTCCCACAGAGATGTCATACAGTTGGCACTCAACATTACCTACAGACACGTTCAGCGCAACTACTTTGTTGTGGAGAAGCTCTTAACCCGAAAGGGTCTCAGAAAGAGAGTCAAAACCGCCCTTCACGATTGCTTGGAAACGATTGACGACACACTGGACGACATTAACAAAGCCAAGAAGGACCTCGAAGATTACCCGTCCGAGAACAAGTCTGTGTATCAGCATGCTGATGACCTTAAAACGCTCATCAGCTCCGCCATGACCAACCATGTCACTTGCTTGGATGGGTTTTCTCATCATAAGTCTGAGAAGCGCTTCAGGGAAGTATATCTGCGGAAAGGGCAAGAACACGCGCAGCACTTGTGTAGCAACGCATTGGCTATGATAAAGAACCTCAGTGCCACTGACATAGCTATTCACGAGATGGAGAGGAAAGTActggtggaggaggaggaggatggGATCGAGTGGCCGGAGTGGATCTCCGCGGAAGAAAGGCGGCTTCTGCAGACGGGTACGGCGACTCCTGacatggtggtggcggcggaCGGCAGCGGGAACTACACGACAGTGCAGGCTGCGGTTGATGCGGCTCCTGAGAGGAGTAGCACGAGATATGTTATTAGGATCAAAGCAGGAGTGTACAGAGAGACCGTGATGGTGCCAAAGACGAAGACTAACATCATGTTCTTGGGTGATGGTAATCGTAATACTATCATCACAGCTAGTAAAAATGTTGTTGATGGGAGCACAACCTTCAACTCTTCCACAGTGGCTGTAGTTGGTGACGGATTCTTGGGCCGAGGCATAACCTTTCAGAATGCAGCAGGGCCCTCAAAAGCGCAAGCGGTGGCCTTAAGAGTTGGAGCTGACCTCTCAGCCTTCTATTTGTGTGGCTTCATAGCGTATCAAGACACTCTTTACGTCCACAGGAAACACCAATTCTTTGTGAAATGCTACGTAGCAGGGACAGTGGACTTCATCTTTGGAAACTCAGCTGTTGTGTTACAAGACTGTGACATCAACGCTAGGCGTCCCAATCCAGGCCAAGAGAACACGATCACCGCACAGGGCCGCGCTGACCCCAACCAAAACACAGGCATTGTCATCCAAAAATGTAGGATTAATGCCACCAATGACTTGGAATCTGCGAAAGGCAGCTTCCGAACGTTTCTTGGGAGGCCATGGAAGGTGCACTCTCTCACTGTCATCATGCAATCAAACATAAGTGATATCATTGACCCTGCTGGGTGGCTTCAGTGGAATGGGGATTTTGCGTTGAACACATTGTACTATAGGGAATATAACAACACTGGGTCTGGGGCTAACACCTCACACAGGGTTAATTGGATAGGGTTCAAGGTAATAACTAATGCTTCCGACGTCCAACCTTTTACTCCCCAGAATTTCATTGCAGGTTCCACCTGGTTGGACCACGACCACGTTCCTTTCTTTGTGAGCCACTCCAAAACACAGTCTTCACTCCCTTCCCTTCccttgtgtttggaaaccatACATACCATtatgaccaaaatgaaacacCTCACCAAGAAGAAACTCTTGTTGGCTCTCTGTGCTACTCTCCTTCTGGTGGCCTCCGGCGACAATGGCTCCTCCCCATCCCACGCCATCATCAAAAGCGCTTGCAGCAGCACCTTGTACCCGGAATTGTGCTTCTCAACCATAGCCTCTGAACCGGGCCTTGCCCACAAAGTTTCGAGCCACAAAAATGTGATAGAGGTGTCGTTGAACATAACCACCGGAATAGTTGAGCGCAATTACTTTACCATCCAGAAGCTCTTACACCGGAGCCTGACCAAGAGGCAGAAAACGGCCCTCCACGATTGCTTGGAAACCATTGACGAGACCCTGGAGGAGCTTCACAAGGCCATGGATGACCTCAAAGACTACCCCTCCAACTCCAAGAAGCCTCTGTCTCAGCATGCCGATGATCTCAACACTCTGATCAGTTCCGCCATAACCAACCAAGAGACTTGCCTGGATGGTTTCTCTCATGACGAGGCTGACAAAAGACTCAGGCAACATCTGGAGGGAGGGCAAGTCCACGTGGAGCACTTGTGCAGCAACGCATTGGCCATGACAAAGAATCTCACTCATGCTGACGTGGCtcctcaccacaacaacaccaGGAAACTCATGGAAgctgatgatgatgatagaaTCAAGTGGCCGGACTGGATTTCTGCCGCAGACCGCCGCCTTCTGCAGACCGGTACGCTGAATCCTGACCTGGTCGTGGCGGCGGACGGCACCGGGGACTTCACCACGGTGTCGGCTGCCGTGGCTGCGGCTCCCGAAAAGAGTACCAAGAGATATGTTATTAAGATCAAAGCAGGAGTTTACAGAGAGAATGTGGATGTGCCAAAGAAAAAGACTAATATCATGTTCGTGGGTGATGGCAGAACCAACACTATCATCACAGCAAGTAGAAATGTTGTTGATGGCAGCACCACCTTCAACTCTGCCACAGTAGCTGTAGTGGGGGAAAGATTCTTGGCCCGAGACATAACCTTCCAAAACACAGCTGGTCCCTCAAAGCACCAAGCAGTTGCCCTCCGAGTTGGCGCTGACCTCTCCGCCTTCTACTTGTGCGACTTCCTTGCATACCAAGACACCCTTTACGTCCACAGCAATCGCCAATTCTTTGTGAAATGCTACATAGCAGGCACAGTGGACTTCATCTTTGGCAACTCAGCTGCTGTCTTACAAGACTGTGACATCCACGCCAGGCGTCCCAATCCAGGCCAAAAGAACATGGTCACCGCACAAGGCCGCGTTGACCCCAACCAGAACACAGGCATTGTCATCCACAAAAGTAGGATTGGTGCCACCAAGGACTTGGAATCTGTCAAAACCAGCTTCCCTACGTTTCTTGGGAGGCCGTGGAAGGAGTACTCTCGGACTGTCATCATGCAATCAACCATAAGTGATGTCATTGACCCTGCTGGCTGGCATGAGTGGAATGGCAATTTTGCCTTGAATACCTTGTTTTATGGAGAGTATCACAACACTGGGCCCGGGGCTGACACCTCACGCAGGGTAATTAATTGGAAAGGGTTTAAGGTCATTACCAGTGCTGCTGAGGCTCAGACTTTTACTCCTGGGAATTTCATTGCAGGTTCAGGCTGGTTGGCCTCTACTGGATTTCCATTCTCTCTTGGCCTCTAA 4560 0.4794 MTDIKQLAFAKTSDYLLKKNKKKLFLSLLATLLLVGAQPRTLLFIHTTSEPPHVTDKVFSHRDVIQLALNITYKYVQRNYLVVEKLLTRKGLSKRVKNALHDCLETIDDTLDDITKAKKDLEDYPSEKKSLYEYADDLKTLISSAITNQVTCLEEFSHQKSEKRFRELYLRKGQEHVQHLCSNALAMTKNLADTDIAIHEMERKLVEEDGIKWPEWISAADRRLLQTGTVTPDVVVAADGSGNYRTVSAAVDAAPERSSKRYVVRIKAGVYRENLDVPRTKTNIMFLGEDNSNTIITARNVVDGSTTFDSATVAVVGEGFLANGVTFQNAVGPLKHQAVALRVGADLSAFYLCGFIAIGATKDLQAVKGSFQSFLGRPWKEYSHIVIMQSSISDIIHLAGWFEWDGDFALNTLYYGEYHNTGAGADTSKRVSWKGFKVITSASEAQAFTPGNFIAVFSHRDVIQLALNITYRHVQRNYFVVEKLLTRKGLRKRVKTALHDCLETIDDTLDDINKAKKDLEDYPSENKSVYQHADDLKTLISSAMTNHVTCLDGFSHHKSEKRFREVYLRKGQEHAQHLCSNALAMIKNLSATDIAIHEMERKVLVEEEEDGIEWPEWISAEERRLLQTGTATPDMVVAADGSGNYTTVQAAVDAAPERSSTRYVIRIKAGVYRETVMVPKTKTNIMFLGDGNRNTIITASKNVVDGSTTFNSSTVAVVGDGFLGRGITFQNAAGPSKAQAVALRVGADLSAFYLCGFIAYQDTLYVHRKHQFFVKCYVAGTVDFIFGNSAVVLQDCDINARRPNPGQENTITAQGRADPNQNTGIVIQKCRINATNDLESAKGSFRTFLGRPWKVHSLTVIMQSNISDIIDPAGWLQWNGDFALNTLYYREYNNTGSGANTSHRVNWIGFKVITNASDVQPFTPQNFIAGSTWLDHDHVPFFVSHSKTQSSLPSLPLCLETIHTIMTKMKHLTKKKLLLALCATLLLVASGDNGSSPSHAIIKSACSSTLYPELCFSTIASEPGLAHKVSSHKNVIEVSLNITTGIVERNYFTIQKLLHRSLTKRQKTALHDCLETIDETLEELHKAMDDLKDYPSNSKKPLSQHADDLNTLISSAITNQETCLDGFSHDEADKRLRQHLEGGQVHVEHLCSNALAMTKNLTHADVAPHHNNTRKLMEADDDDRIKWPDWISAADRRLLQTGTLNPDLVVAADGTGDFTTVSAAVAAAPEKSTKRYVIKIKAGVYRENVDVPKKKTNIMFVGDGRTNTIITASRNVVDGSTTFNSATVAVVGERFLARDITFQNTAGPSKHQAVALRVGADLSAFYLCDFLAYQDTLYVHSNRQFFVKCYIAGTVDFIFGNSAAVLQDCDIHARRPNPGQKNMVTAQGRVDPNQNTGIVIHKSRIGATKDLESVKTSFPTFLGRPWKEYSRTVIMQSTISDVIDPAGWHEWNGNFALNTLFYGEYHNTGPGADTSRRVINWKGFKVITSAAEAQTFTPGNFIAGSGWLASTGFPFSLGL 1519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0027 1519 Pfam Pectinesterase 634 930 IPR000070 GO:0030599|GO:0042545
Ssu4g0027 1519 Pfam Pectinesterase 233 357 IPR000070 GO:0030599|GO:0042545
Ssu4g0027 1519 Pfam Pectinesterase 1207 1504 IPR000070 GO:0030599|GO:0042545
Ssu4g0027 1519 PANTHER PECTINESTERASE 44 357 - -
Ssu4g0027 1519 Gene3D - 1201 1519 IPR012334 -
Ssu4g0027 1519 Gene3D - 227 357 IPR012334 -
Ssu4g0027 1519 Gene3D - 628 944 IPR012334 -
Ssu4g0027 1519 PANTHER PECTINESTERASE 992 1518 - -
Ssu4g0027 1519 PANTHER PECTINESTERASE 358 456 - -
Ssu4g0027 1519 CDD PMEI-like_3 51 192 - -
Ssu4g0027 1519 SUPERFAMILY Pectin lyase-like 1204 1518 IPR011050 -
Ssu4g0027 1519 SMART PMEI_2 997 1157 IPR006501 GO:0004857
Ssu4g0027 1519 SMART PMEI_2 449 585 IPR006501 GO:0004857
Ssu4g0027 1519 SMART PMEI_2 40 187 IPR006501 GO:0004857
Ssu4g0027 1519 Pfam Plant invertase/pectin methylesterase inhibitor 459 585 IPR006501 GO:0004857
Ssu4g0027 1519 Pfam Plant invertase/pectin methylesterase inhibitor 1001 1157 IPR006501 GO:0004857
Ssu4g0027 1519 Pfam Plant invertase/pectin methylesterase inhibitor 60 187 IPR006501 GO:0004857
Ssu4g0027 1519 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 1001 1162 IPR035513 -
Ssu4g0027 1519 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 456 589 IPR035513 -
Ssu4g0027 1519 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 191 IPR035513 -
Ssu4g0027 1519 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 192 IPR035513 -
Ssu4g0027 1519 Gene3D Invertase/pectin methylesterase inhibitor family protein 998 1163 IPR035513 -
Ssu4g0027 1519 CDD PMEI-like_3 1004 1162 - -
Ssu4g0027 1519 Gene3D Invertase/pectin methylesterase inhibitor family protein 453 589 IPR035513 -
Ssu4g0027 1519 ProSitePatterns Pectinesterase signature 2. 778 787 IPR033131 -
Ssu4g0027 1519 ProSitePatterns Pectinesterase signature 1. 659 678 IPR018040 -
Ssu4g0027 1519 Gene3D - 358 452 IPR012334 -
Ssu4g0027 1519 PANTHER PECTINESTERASE 456 942 - -
Ssu4g0027 1519 SUPERFAMILY Pectin lyase-like 630 942 IPR011050 -
Ssu4g0027 1519 ProSitePatterns Pectinesterase signature 1. 258 277 IPR018040 -
Ssu4g0027 1519 Coils Coil 1074 1094 - -
Ssu4g0027 1519 TIGRFAM PME_inhib: pectinesterase inhibitor domain 978 1162 IPR006501 GO:0004857
Ssu4g0027 1519 TIGRFAM PME_inhib: pectinesterase inhibitor domain 60 191 IPR006501 GO:0004857
Ssu4g0027 1519 TIGRFAM PME_inhib: pectinesterase inhibitor domain 458 589 IPR006501 GO:0004857
Ssu4g0027 1519 PANTHER PECTINESTERASE 358 456 - -
Ssu4g0027 1519 PANTHER PECTINESTERASE 44 357 - -
Ssu4g0027 1519 SUPERFAMILY Pectin lyase-like 229 454 IPR011050 -
Ssu4g0027 1519 CDD PMEI-like_3 458 591 - -
Ssu4g0027 1519 PANTHER PECTINESTERASE 992 1518 - -
Ssu4g0027 1519 PANTHER PECTINESTERASE 456 942 - -
Ssu4g0027 1519 ProSitePatterns Pectinesterase signature 2. 1351 1360 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0027 Ssu-Chr4 581317 604228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0027 454 941 Carbohydrate Esterase AT3G14310 61.886 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0027 K01051 - pvu:PHAVU_010G123100g 997.267