Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0023 ATGTGGTGGAGATCAGCATCATTCATCATGGACAGGCAGCAGAACGAGGCGGCTTTGAAGGGGGACTCGCCCCCCTCCATCACTGCCACCGACTCCTCAATCTCAATCTCAATCCCAAACCCTAACCCTAAAATCTCTGCGTACTACGAGACGAGAGCGGCGCACCACGGCGTGGTGACGAGCGACTGGCTGGCCCAGGCTCAGGCGGCGATTGGGCCGGACCCAGACCCTGACCCTGAACCTCAAGTGAGGCCCAATTCGGACAAGCCCTTCAGTGTGATCGAGGAGTTTAATAACTGGCGGAAACAGCCCCATTTGGCGGAAGCCGTCGCCGCCATTCGCGCCTTGGCGGCCGTGATAAGGTCGAGCGAGGCAACGACGATGATGCAGCTGGAAATGGAGCTGAAGAAGGCCTCCGATTCTCTCAAGTCCTGGGATACGACCTCTATCTCTTTGACAGCGGGCTGTGATCTCTTTATGCGATATGTCACTCGGACTTCTGCTTTAGAATATGAACACTTCAATTCCGCTAAATCGCGCTTGATTGAGCGTGCTGAGAAGTTTGGCCAAATCTCCTACAAGGAAACCCTCCTTCCCAACTCCAACTCTCACTGCACTATAATCTTCTCTTGTTTTGTCTTCTTTCCTCACACTTTCGTTTGTTTATTTTGCTTGCAGGCCCGCAAAGTTATTGCAATGTTGAGTCAGGATTTTATATTTGATGGTTGTACAATTTTGGTTCATGGTTTTTCCAGAGTTGTCTTTGAAGTCCTAAAACTGGCTGCACAAAATAAGAAACTATTTCGGGTCTTCTGCACagAGGGAAGACCAGATCGAACAGGATTGCGGTTGTCCAATGAGCTGGCAAAGCTTGATGTTCCTGTGAAACTTCTAATAGATTCTGCTGTTGCATATACTATGGATGAGGTGGATATGGTTTTTGTAGGTGCAGATGGAGTTGTCGAAAGTGGGGGCATAATCAACATGATGGGAACCTACCAAATTGCATTGGTTGCACACAGTATGAATAAACCAGTTTATGTCGCTGCTGAAAGCTACAAGTTTGCTCGTCTTTACCCTCTTGACCAAAAGGATTTAGCCCCTGCTTTACGTCCTATTGATTTTGGCGTACCTATTCCATCCAAGGTTGAGGTTGAAAGGTCCGCGCGGGACTACACCCCTCCTCAATATCTGACTCTGCTTTTCACAGATTTAGGTGTTCTTACTCCATCTGTTGTTAGTGATGAGCTGATCCAGCTATACTTATAG 1269 0.4823 MWWRSASFIMDRQQNEAALKGDSPPSITATDSSISISIPNPNPKISAYYETRAAHHGVVTSDWLAQAQAAIGPDPDPDPEPQVRPNSDKPFSVIEEFNNWRKQPHLAEAVAAIRALAAVIRSSEATTMMQLEMELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEHFNSAKSRLIERAEKFGQISYKETLLPNSNSHCTIIFSCFVFFPHTFVCLFCLQARKVIAMLSQDFIFDGCTILVHGFSRVVFEVLKLAAQNKKLFRVFCTEGRPDRTGLRLSNELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDLAPALRPIDFGVPIPSKVEVERSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0023 422 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 45 204 - -
Ssu4g0023 422 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 225 422 - -
Ssu4g0023 422 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 45 204 - -
Ssu4g0023 422 Pfam Initiation factor 2 subunit family 225 410 IPR000649 GO:0044237
Ssu4g0023 422 Pfam Initiation factor 2 subunit family 105 189 IPR000649 GO:0044237
Ssu4g0023 422 MobiDBLite consensus disorder prediction 69 89 - -
Ssu4g0023 422 Gene3D - 226 422 IPR042529 -
Ssu4g0023 422 SUPERFAMILY NagB/RpiA/CoA transferase-like 105 421 IPR037171 -
Ssu4g0023 422 Gene3D - 89 191 IPR042528 -
Ssu4g0023 422 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 225 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0023 Ssu-Chr4 539140 540971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0023 1 422 Eukaryotic Initiation Factors Gene Family AT1G53880 74.413 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0023 K03239 - gmx:100799015 664.455