Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0020 ATGTGTGGAGGTGCTATTATCTCTGACTTCATTCCGGCGGCGGTGACTGCGAGGTCTCGCCGGCTGACCGCCGATTTCCTGTGGCCGGATTTGAAGAAGCGGAGCTCGGGGAAGTCTGAGGTCATCGACTTGGACGATAAGTTCGAGGCTGATTTCAGGGAATTTAAAGATGATTCCGACATCGACATCGACGACGATGTCAAGCCCTTTCTTTTCGCCGCCTCTTCTCGTCGGTCTACGGCAGCGAAATCTGTGGCATTCAAAGGTCAAGCTGAGAAATCtgcaaagagaaagaggaagaatcaGTATAGGGGAATCCGCCAACGTCCTTGGGGAAAATGGGCAGCTGAGATCCGGGATCCAAGAAAGGGGGTTCGCGTCTGGCTCGGAACCTTCAACACTGCTGAAGAAGCTGCAAGAGCTTACGATGCTGAAGCACGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGAGGAGGCACCAGTTGCTTCTGTAAAACGCTCTAAGGTAAATCCACAGGAAAATCTGAAGACTGTTCAACCCAATCTGAGCCACAGGTTCAATGCTGGCAACAATCTGAAGGACTTTTGTTGTCCTATGGATCTGGTGGAACAGAAACCCCTAGTTAACCAGTATGCTAACATGGGTTCCTTCCCTGGCAGTGGAAATGGGCTCACATCCCTTCCTTCGTCTGATGATGTGACCCTTTACTTCAGTTCAGATCAGGGTAGTAATTCATTTGATATGGCAGATCTTGGGTGGAGTGAACAGGGCCCCAAAACTCCTGAGATCTCATCCATGCTTTCTGATCCTTTGGATTGTGAATCTCATTTTGTACAAGATGCCAACCAGCAGAATAACATGCAGACTAACTCTCAGGATGTGGTATCTATGCAAGATGATTCTGCAAAGACACTCTCTGAGGAGCTTGTGGGTATTGAATCTGAGTTGAAGTTCTTTCAGATGCCTTATCTTGAAGGGAGCTGGGGTGATACTTCATTGGAATCCTTTCTATCTGGTGACACAACTCAGGATGGTGGAGACCTGATGAACCTTTGGAGCTTTGATGACATTCCTTCCATGGCTGGCGGAGTTTTCTGA 1107 0.4761 MCGGAIISDFIPAAVTARSRRLTADFLWPDLKKRSSGKSEVIDLDDKFEADFREFKDDSDIDIDDDVKPFLFAASSRRSTAAKSVAFKGQAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEEAPVASVKRSKVNPQENLKTVQPNLSHRFNAGNNLKDFCCPMDLVEQKPLVNQYANMGSFPGSGNGLTSLPSSDDVTLYFSSDQGSNSFDMADLGWSEQGPKTPEISSMLSDPLDCESHFVQDANQQNNMQTNSQDVVSMQDDSAKTLSEELVGIESELKFFQMPYLEGSWGDTSLESFLSGDTTQDGGDLMNLWSFDDIPSMAGGVF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0020 368 PANTHER DNA-BINDING DOMAIN 1 362 IPR044808 GO:0003700|GO:0009873
Ssu4g0020 368 SUPERFAMILY DNA-binding domain 102 160 IPR016177 GO:0003677
Ssu4g0020 368 Pfam AP2 domain 102 151 IPR001471 GO:0003700|GO:0006355
Ssu4g0020 368 Gene3D AP2/ERF domain 101 161 IPR036955 GO:0003700|GO:0006355
Ssu4g0020 368 CDD AP2 102 160 IPR001471 GO:0003700|GO:0006355
Ssu4g0020 368 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Ssu4g0020 368 PRINTS Ethylene responsive element binding protein signature 125 141 IPR001471 GO:0003700|GO:0006355
Ssu4g0020 368 ProSiteProfiles AP2/ERF domain profile. 102 159 IPR001471 GO:0003700|GO:0006355
Ssu4g0020 368 PANTHER EREBP TRANSCRIPTION FACTOR 1 362 - -
Ssu4g0020 368 SMART rav1_2 102 165 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0020 Ssu-Chr4 488375 490348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0020 1 368 AP2-EREBP Transcription Factor Family AT3G14230 45.874 3.02e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu4g0020 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0020 K09286 - gmx:100170723 548.125