Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0013 ATGGCCAACGGAGGAGAGAAAGGAAGCGGTGAGTTGTATGCGGTTCTGGGGTTAGACAAGGAGTGTACCCAATCTGAGCTCAAGAGTGCTTATAAGAAACTTGCACTGAAATGGCACCCACATCGTTGTTCAGTGTTTGGCGTGGAAGAAGCCAAGAAGAAATTCCAGGCAATTCAACACTCCTATTCTGTCTTATCTGACGCCAACAAAAGGTTCTTGTACAACGTAGGAGTCTATGACAGCAATGACGACCAAAACGGCATGAGTGACTTCTTGAACGAAATGGCGACTATGATGAGCCAAACAAAACCCAATGTAAGCTGA 324 0.4568 MANGGEKGSGELYAVLGLDKECTQSELKSAYKKLALKWHPHRCSVFGVEEAKKKFQAIQHSYSVLSDANKRFLYNVGVYDSNDDQNGMSDFLNEMATMMSQTKPNVS 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0013 107 PANTHER PUTATIVE, EXPRESSED-RELATED 3 105 - -
Ssu4g0013 107 CDD DnaJ 11 67 IPR001623 -
Ssu4g0013 107 PRINTS DnaJ domain signature 50 70 IPR001623 -
Ssu4g0013 107 PRINTS DnaJ domain signature 31 46 IPR001623 -
Ssu4g0013 107 PRINTS DnaJ domain signature 13 31 IPR001623 -
Ssu4g0013 107 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 3 105 - -
Ssu4g0013 107 Pfam DnaJ domain 12 75 IPR001623 -
Ssu4g0013 107 SUPERFAMILY Chaperone J-domain 11 88 IPR036869 -
Ssu4g0013 107 SMART dnaj_3 10 70 IPR001623 -
Ssu4g0013 107 Gene3D DnaJ domain 9 105 IPR036869 -
Ssu4g0013 107 ProSiteProfiles dnaJ domain profile. 11 78 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0013 Ssu-Chr4 392257 393365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0013 13 75 C2H2 Transcription Factor Family AT1G74250 39.394 1.32e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0013 - - lja:Lj3g3v2576120.1 166.777