Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0002 atgcGTGGCTCTCGTGGGAAGCATTCctggtttttatttttcatctcgGTTATTATATCTATCTCTGGCTCTGGCACAGACACACTTAGTCCTACAGAGCAGGTGACCATGGGAGGATTAGGAACATCATCAATGAATTTGAACCCTACTACATTTGCTATCAGTATGATTGCTACGGTGCTGATATGGTGGTTTTGGAATGCGCTCAACTGGGTGTGGCTGAGACCAAAGACGATAGAGAGGCGTCTCAAAGAGCAGGGTTTTCTAGGCAATTCCTACCGCCCCTTGGTTGGAGACATCAGAGATATGGTTAAAATGACTAAGGAAGCCAAATCCAAACCTATGGATCCTCACTCTAATGACATTGCACCCCGTGTATTGCCTTACGTTGTCCACACCATCGCTAAATACGGTAGGAATTCATTTATGTGGCTTGGTCCAAGACCAAGGGTATTCATCTTGGATCCAGACAAATTCAAAGAAATCGCTACTAAGGTCTATGAATTTCAAAAGCCAGACACTAGTCCACTTTTCAAGCTTCTAGCATCGGGATTTGCAAACTATGATGGCGACAAGTGGGCTAAACACAGAAAGATCGTGAGTCCAGCATTCAATGTCGAGAAATTGAAGCTCTTGGTACCAATATTTTGCCAGAGTTGCGATGATTTGATCAGCAAATGGGAGAGCGTGTTATCTTCGTCTAATGGGTCTTGTGAGTTAGATGTGTGGCCTTTCGTCCAAAACGTGTCAAGCGACGTCCTTGCTCGTGCAGGCTTTGGAAGCAGCTatgaagaaggaagaaaagtaTTCGAACTTCAAAGGGAAATGCTTCAACTTACAATGACGCTCTTTAAGTTTGCTTTCATTCCAGGTTATAGATATACGCCATTCTCGTGTTTCAAGGATCAATTCGCCGTTCTCATTTCCATTCTCGCGTCGTCGTGttgTTTGGAAGGACTTGCTTCAACCACAATATCAAAAATAGGTGGCCTTCACCAAATGCTTGGTTTGCACCAATATGGAATTGCGGCTGTACCCAGGGATTCCATTCAATGCCTTCCTGAGTCCAAGGGAACTACCAAACTCGGAGCATCTTTTGAGACTCCTTGTGGTCGTCTGTTGATTAAACCCAAAGATTATATTGAAATGATTTCATGCATGAGGCCAAATATATGGGCCACTTTGGCTGATGAAGTACCTGCTTGGGTTTCTGATAAAAGGAACAAAACCTCAGTAGATAGAACTGTGCGGTGGCTTGATGATTGCCTTGCATTAAATCCGGCAGCTGGATCCGTCTTTGGTGCCATTGTTGGAGGTCCAAATTTGGATGAAAGGAAGCGATGTGCAGAGGAGGTAGCCAAGCGAAATTTATCAGGTTATTGGATTGGAGGATTTGGTCTTGGAGAGGGCATTGATGAGCGACCTGCTCTTCTAAGTGCTATTATAGATATCTTGCCAGATGAAAAGCCACGCATGATCAGTGGGCTTGGACTTCCAGAGGAGATCTTGGAGGGAATTAATGCTGGGATTGATCTTTTTGATTCAACGTACATCTATTCCCTCACACTTGGAGGATTTGCACTAACGTTTTCACTGGACAAGAGTGGgaatcaatataattttcagAAAGGCCAGATTGGAAGTGActtgactaaaattaatttgagagCAAAAGTTTACAGGAAAGATATGTCCCCCATTTTAGGAACCTGCACCTGCTATACATGCCAGAATCATACTAAAGCATACATCAATCACTTATTTAATGTTCATGAAATGCTGGCTCAGATTCTGCTAGAAATCCATAATACACACCACTATTTGACGTTCTTTCATGTAATAAGAGAAGCAATAAAGGATGGAAGGTTTGAGAAATTTCGACGGACATTCATTGAGAGCAGGCGTGCACATCACGAAAGGGAAGCTATTTGTGCTTGA 1938 0.4164 MRGSRGKHSWFLFFISVIISISGSGTDTLSPTEQVTMGGLGTSSMNLNPTTFAISMIATVLIWWFWNALNWVWLRPKTIERRLKEQGFLGNSYRPLVGDIRDMVKMTKEAKSKPMDPHSNDIAPRVLPYVVHTIAKYGRNSFMWLGPRPRVFILDPDKFKEIATKVYEFQKPDTSPLFKLLASGFANYDGDKWAKHRKIVSPAFNVEKLKLLVPIFCQSCDDLISKWESVLSSSNGSCELDVWPFVQNVSSDVLARAGFGSSYEEGRKVFELQREMLQLTMTLFKFAFIPGYRYTPFSCFKDQFAVLISILASSCCLEGLASTTISKIGGLHQMLGLHQYGIAAVPRDSIQCLPESKGTTKLGASFETPCGRLLIKPKDYIEMISCMRPNIWATLADEVPAWVSDKRNKTSVDRTVRWLDDCLALNPAAGSVFGAIVGGPNLDERKRCAEEVAKRNLSGYWIGGFGLGEGIDERPALLSAIIDILPDEKPRMISGLGLPEEILEGINAGIDLFDSTYIYSLTLGGFALTFSLDKSGNQYNFQKGQIGSDLTKINLRAKVYRKDMSPILGTCTCYTCQNHTKAYINHLFNVHEMLAQILLEIHNTHHYLTFFHVIREAIKDGRFEKFRRTFIESRRAHHEREAICA 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0002 645 PANTHER CYTOCHROME P450 FAMILY MONOOXYGENASE 30 301 - -
Ssu4g0002 645 Hamap Queuine tRNA-ribosyltransferase accessory subunit 2 [QTRT2]. 197 629 IPR028592 GO:0006400|GO:0008479
Ssu4g0002 645 Pfam Cytochrome P450 135 286 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g0002 645 SUPERFAMILY tRNA-guanine transglycosylase 323 633 IPR036511 GO:0006400|GO:0016763
Ssu4g0002 645 TIGRFAM tgt_general: tRNA-guanine family transglycosylase 358 634 IPR002616 GO:0006400|GO:0016763
Ssu4g0002 645 Gene3D - 307 636 IPR036511 GO:0006400|GO:0016763
Ssu4g0002 645 Gene3D Cytochrome P450 53 306 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g0002 645 SUPERFAMILY Cytochrome P450 124 298 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g0002 645 Pfam Queuine tRNA-ribosyltransferase 321 635 IPR002616 GO:0006400|GO:0016763
Ssu4g0002 645 PANTHER CYTOCHROME P450 FAMILY MEMBER 30 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0002 Ssu-Chr4 17331 51194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0002 45 296 Cytochrome P450 AT3G14690 48.413 1.83e-89 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0002 K15407 - gmx:100778880 641.343