LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu3g3361	ATGGCATCCAATAATCCTCATGAGATCATGGACGATGAGggatttgattGGGAAGCAGCTGCTAGAGAAATCGACGTCGTTTGCCAAATGACCAGGGACGCAAAGGGGAAGGGAAAGGGAAAGGCTTATGAGAAGAGAAAGCAATCCACTCTCGATAAGTTCGTGTCTATTGCCAATGCCAAGAAGAAAACCCCAACACCGCAGTTCGAAGAAGATGACGAAGGCCCTACTTTGGTCCACCACATTGACGTGGAGGCGGCCAAAACTTGGATATATCCAGTTAATGTTCCTCTCCGTGACTATCAATTTGACATTACCCAGTCCGCGCTCTTTTCAAACACATTGGTGGCCTTGCCAACAGGACTTGGCAAAACACTCATAGCCGCGGTTGTTATGTATAACTACTTCAGATGGTTTCCTCAAGGCAAAATAGTCTTTGCTGCTCCTTCTCGGCCACTTGTCATGCAGCAGATTGAAGCATGCCACAATATTGTGGGAATACCTCAGGGTGCATTTAATTGCAGGAATGGACAGGTTGATATGACTGGTCAGCTAAGTCCTCCCAAAAGAGCTCGATTTTGGAAAACAAAGCGAGTTTTCTTTGTCACTCCACAAGTGTTGGAAAAGGATATTCATTCTgGTACATGTTTGGTGAAGTACTTGGTATGTTTGGTGATTGATGAAGCTCACAGAGCAATGGGAAATTACGCTTATTGTGAAGCAGTTCGTGagTTAATGGCTGTACCGGTACAGCTGAGAATATTAGCGTTAACTGCAACGCCAGGATCCAAGCAGCAGACAGTCCAGGCTGTCATTGATAATCTGCATATCTCCAAACTTGAATATCGCAGCGAAATTGACCATGACGTTATCTCATATGTTCACAATAGGAAGATAGAGTTGATACAGGTAGCAATGGGCCCAGAAGctgtacaaataaataataagtttatgGAAGTGATACGCCCTATAGTAGCCAGGCTTACAAATATGGGGGTCATTCAGAACAGAGATTACCGCACTTTGAGCCCTTGTCAATTACTTGAAATAAGGGAAAAGTTTCGTCAGTGGCCTAGGCAAGATCTTTCTCATGTCAACTATGAAGATGTTGAAGGGTATTTTGGAGTTCTCATTACTCTTTATTACATCCATAAGCTACTTTCAAGTCATGGAATAAGGCCAGCATATGAGATGCTTGAGAGAAAATTGAAGCAAGGatattttgcaaaatttatgAGTAAAAATGAAGTTATTTTGAAAGCAAGGCAACTAATGCAGCAAAGTTTGTCTCACGGAGCATCGAGTCCAAAATTGTCCAAAATGCTAGAAGTATTACTGGAGCATTTCAAAACCAATGATCCACAAAACTCCAGGGTAATTATCTTCTCCAATTACAGAGAAAGTGTcagGGATATAATGGATGCACTTGGAGATATTGGGGAATTAGTCAGAGCGACCGAGTTTATTGGTCAAAGTTCAGGGAAAGCAATGAAAGGTCAGTCCCAAAAAGTTCAACAGGCTGTGCTGAAGAAATTTCGATCTGGCACCTATAATGTCATTGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGAATGGGGAGAACCGGGAGAAAGCATGATGGACGAGTTGATATCCTTTGA	1707	0.4107	MASNNPHEIMDDEGFDWEAAAREIDVVCQMTRDAKGKGKGKAYEKRKQSTLDKFVSIANAKKKTPTPQFEEDDEGPTLVHHIDVEAAKTWIYPVNVPLRDYQFDITQSALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEACHNIVGIPQGAFNCRNGQVDMTGQLSPPKRARFWKTKRVFFVTPQVLEKDIHSGTCLVKYLVCLVIDEAHRAMGNYAYCEAVRELMAVPVQLRILALTATPGSKQQTVQAVIDNLHISKLEYRSEIDHDVISYVHNRKIELIQVAMGPEAVQINNKFMEVIRPIVARLTNMGVIQNRDYRTLSPCQLLEIREKFRQWPRQDLSHVNYEDVEGYFGVLITLYYIHKLLSSHGIRPAYEMLERKLKQGYFAKFMSKNEVILKARQLMQQSLSHGASSPKLSKMLEVLLEHFKTNDPQNSRVIIFSNYRESVRDIMDALGDIGELVRATEFIGQSSGKAMKGQSQKVQQAVLKKFRSGTYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVDIL	568

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu3g3361	568	Pfam	Helicase conserved C-terminal domain	444	560	IPR001650	-
	Ssu3g3361	568	SMART	helicmild6	471	561	IPR001650	-
	Ssu3g3361	568	Gene3D	-	94	294	IPR027417	-
	Ssu3g3361	568	CDD	SF2_C_FANCM_Hef	435	568	-	-
	Ssu3g3361	568	Gene3D	hef helicase domain	308	430	-	-
	Ssu3g3361	568	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	437	568	IPR001650	-
	Ssu3g3361	568	Gene3D	-	431	568	IPR027417	-
	Ssu3g3361	568	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	142	565	IPR027417	-
	Ssu3g3361	568	CDD	FANCM_ID	311	425	-	-
	Ssu3g3361	568	PANTHER	FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER	14	565	-	-
	Ssu3g3361	568	SMART	ultradead3	94	300	IPR014001	-
	Ssu3g3361	568	Pfam	Type III restriction enzyme, res subunit	111	261	IPR006935	GO:0003677\|GO:0005524\|GO:0016787
	Ssu3g3361	568	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	105	279	IPR014001	-
	Ssu3g3361	568	PANTHER	FANCONI ANEMIA GROUP M PROTEIN	14	565	IPR039686	GO:0006281\|GO:0043138
	Ssu3g3361	568	CDD	DEXDc_FANCM	96	283	IPR044749	GO:0005524
	Ssu3g3361	568	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	113	409	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu3g3361	Ssu-Chr3	90484133	90503087	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu3g3361	396	559	Eukaryotic Initiation Factors Gene Family	AT3G13920	26.404	6.95e-09	56.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu3g3361	K10896		-	gmx:100820078	1026.16