Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3356 ATGGCTTTTTGGGGAGTGGAAATAAAACCGGGAAAGCCTTTTACTCATAAATATGACGACTCGAAAGGACGCCTCCATATTTCAATGGCCACTTTGGGGTTGGGCACTGCAACAGCAAAAAGCACACTGCAGTGCAATGTGGGAAACAGGAGCCCTGTATATCTATGCTCTCTCTATCCTGGAAACACCGAGTCATTGCAATTAAATTTAGAGCTCGAGGAAGTTGATCAAGTTGTTTTCTCTGCAATTGGCCCTCGGAGCATTCATCTCTGCGGTTACTATCTTGCCACTGCCCGCAGTACCAATGTTATTGATGATTCGGAATCATATGGGGAGGATATTGCAGAAACAGAAACAGAGAGATCTGATAACAGTGATGAAGATAAGTATGAGGATAGTTTTATTGATGATGACGGTGTTCCAGAGGTCTTCCCACCATCTCCTATTTCTAATGAAGAGGAAGCTTCTCACTATAACAGACCAAAAGGTAAGAAAGGCAGTCTTAAACGGCTTAGGAAGAAGTACCAGTCAGTAGAGTCAGATGATGATGGCGGTTATGAAGAAAAGATAATTGTCAATGACAGTATGAATGACCAAACCAAGCAAATCGAAAATGAAGATAGCCTACCTATTTCATCTCTTTACAAGATTAAAGCTTCTGGAAGGGTCTTGGTCTTCGACCAGGAAATGGATGCTAATGTTGACAGAGGAGCAGGTGATGCCAGTGACAAGAATGGTGAAGATGGTGGAAATAATATagttgaaacaaatttaaaagccGACCATGTCCTTGTAGATAGTCAGACACACAGGGAAGCTGAACCCTCAAACCACTTGGTAGATCCTTGCACGGTTCTGGATGTTGgggatattaaaaaattaaaaaagaaaaagaagggaaagCAAAAAGAGACAAAGAGCTCCTGTAATGCCTATTCTATCAAACTAGATAATGGTATAGGAGGTGAgccaaaaatggaaaagatgACCCAGGATTTTGTGGCAGGAAATAAACAACAGCAGCATGCTGATGATAAGGAAACTGAAACCATGGACAAAGTACTACCTTCCTCTCAGGTTGATCACGGACAGGGTGAAAAGCCaaggaagaaaaggaaagaacgGTCTAAGGAGGGGGTGCTTTCGATTGTTACTGATGCTTATCATAACAATCTTGTTAATCTGTCTCAGAGCAATGAACACAATAAACAGCACACAGTTAATGAGAGTGTGAATAATGGTGCTCAATCTGAGGATAGAAAAgttaagaaaaggaagaaaatgagtAAAAGTCAGGGCAATGGGGAAGTTGTAAATTCTGATATGCCTGTATCTGTTGAGCAAAGTGGTGAGACAGAGATTTTGGAGGTGGACAGAAATATAAGGGAAGATGCAAACCCTTCCCAAGTTAGAACATTATCAAATGGACTACTTATTCAAGAACTAGAGAAAGGGATAAAAGATGGCAAAATTGCTGCTTCAGGGAAAAAGATCAGCATTTATTACACTGGCAAGCTGAAGGAAAATGGAGTAGTATTCGAGTCAAATGCTGGCCAAGCTCCTTTCAAATTTCGCCTTGGTAAAGGAGAAGTTATCGAGGGTTGGGATGTTGGCCTTGAAGGCATGCAAGTTGGAGAAAAGAGAAGACTTGTAATTCCACCATCAATGACGTCTGAGAGTGGTGGACACAGTGCCAATATACCACCAAATTCATGGTTGGTTTATGACTTCGAACTGGTTAAAGTTCATTGA 1752 0.3898 MAFWGVEIKPGKPFTHKYDDSKGRLHISMATLGLGTATAKSTLQCNVGNRSPVYLCSLYPGNTESLQLNLELEEVDQVVFSAIGPRSIHLCGYYLATARSTNVIDDSESYGEDIAETETERSDNSDEDKYEDSFIDDDGVPEVFPPSPISNEEEASHYNRPKGKKGSLKRLRKKYQSVESDDDGGYEEKIIVNDSMNDQTKQIENEDSLPISSLYKIKASGRVLVFDQEMDANVDRGAGDASDKNGEDGGNNIVETNLKADHVLVDSQTHREAEPSNHLVDPCTVLDVGDIKKLKKKKKGKQKETKSSCNAYSIKLDNGIGGEPKMEKMTQDFVAGNKQQQHADDKETETMDKVLPSSQVDHGQGEKPRKKRKERSKEGVLSIVTDAYHNNLVNLSQSNEHNKQHTVNESVNNGAQSEDRKVKKRKKMSKSQGNGEVVNSDMPVSVEQSGETEILEVDRNIREDANPSQVRTLSNGLLIQELEKGIKDGKIAASGKKISIYYTGKLKENGVVFESNAGQAPFKFRLGKGEVIEGWDVGLEGMQVGEKRRLVIPPSMTSESGGHSANIPPNSWLVYDFELVKVH 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3356 583 MobiDBLite consensus disorder prediction 432 447 - -
Ssu3g3356 583 MobiDBLite consensus disorder prediction 398 451 - -
Ssu3g3356 583 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 491 580 IPR001179 GO:0003755
Ssu3g3356 583 SUPERFAMILY FKBP-like 442 582 - -
Ssu3g3356 583 MobiDBLite consensus disorder prediction 363 378 - -
Ssu3g3356 583 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 495 583 IPR001179 GO:0003755
Ssu3g3356 583 Gene3D Nucleoplasmin core domain 1 99 - -
Ssu3g3356 583 PANTHER PEPTIDYLPROLYL ISOMERASE 1 280 - -
Ssu3g3356 583 PANTHER PEPTIDYLPROLYL ISOMERASE 395 583 - -
Ssu3g3356 583 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Ssu3g3356 583 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 1 280 - -
Ssu3g3356 583 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 395 583 - -
Ssu3g3356 583 Gene3D - 446 583 IPR046357 GO:0003755
Ssu3g3356 583 MobiDBLite consensus disorder prediction 398 415 - -
Ssu3g3356 583 MobiDBLite consensus disorder prediction 114 128 - -
Ssu3g3356 583 MobiDBLite consensus disorder prediction 334 378 - -
Ssu3g3356 583 MobiDBLite consensus disorder prediction 107 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3356 Ssu-Chr3 90398484 90413082 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3356 494 580 Calmodulin-binding Proteins AT5G48570 40.909 9.11e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3356 K14826 - gmx:100798135 820.076