Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3353 ATGAGCTTTTTACCATTCTGTTCTCCCATGGCTTCCGCAGCAGCTCCTGCCCGGGTTGTAGTATTATACGGAAATCACCCTCACCCACACCCAGAAGCAAAGTTTTTGAGGACAGGAACCCCAAACAGCGCTCGTTGCACTAGTTTGCAGGTCCACGCGTCTCGCAGACCCCAGAGAGCACCCCCTGGAGTTGACACCAGAATCCATTGGGACAACGAAGATGAAGGTTGGGTTGGTGGTACCAAACAGCAACAGACCCAGAAACCCAATAACATGTTGGGTGATGACTTTGCTGATTTCCTCACCACTTCTTCAGGTTCTCATTACGAATTCTTAGGAGTATCACCAGATGCCGATTTAGAAGAAATCAAAGTTGCTTATCGGAAACTGTCAAAGGAGTATCATCCAGACACAACTTCCCTCCCTCTCAAAACTGCCTcagaaaaattcatgaaattaagaGAGGTTTACAACGTTCTTAGTAATGAAGAGAGTCGAAGATTTTATGATTGGACCCTTGCTCAAGAGGCTGCAAGCCGCCACGCAgagaagatgaaaatgaaagtaGAGGATCCTCGCGAGCAACAAGTCAAGAACTGGGAATCTGTTCCAGACATGGTTGACCGCCTTGGTGGAAGGAATATGAAGCTTAGTGATCAGGCAGTTTCTGCCATCACCATTgatctttttatcattatttttgccATATGTTGCATCAtctatgtaattttctttaaagaacCATATTACTACTAG 756 0.418 MSFLPFCSPMASAAAPARVVVLYGNHPHPHPEAKFLRTGTPNSARCTSLQVHASRRPQRAPPGVDTRIHWDNEDEGWVGGTKQQQTQKPNNMLGDDFADFLTTSSGSHYEFLGVSPDADLEEIKVAYRKLSKEYHPDTTSLPLKTASEKFMKLREVYNVLSNEESRRFYDWTLAQEAASRHAEKMKMKVEDPREQQVKNWESVPDMVDRLGGRNMKLSDQAVSAITIDLFIIIFAICCIIYVIFFKEPYYY 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3353 251 Pfam DnaJ domain 108 170 IPR001623 -
Ssu3g3353 251 ProSiteProfiles dnaJ domain profile. 107 173 IPR001623 -
Ssu3g3353 251 SUPERFAMILY Chaperone J-domain 82 169 IPR036869 -
Ssu3g3353 251 ProSitePatterns Nt-dnaJ domain signature. 150 169 IPR018253 -
Ssu3g3353 251 PRINTS DnaJ domain signature 145 165 IPR001623 -
Ssu3g3353 251 PRINTS DnaJ domain signature 127 142 IPR001623 -
Ssu3g3353 251 PRINTS DnaJ domain signature 109 127 IPR001623 -
Ssu3g3353 251 CDD DnaJ 108 162 IPR001623 -
Ssu3g3353 251 SMART dnaj_3 106 165 IPR001623 -
Ssu3g3353 251 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC 32 249 IPR044618 -
Ssu3g3353 251 Gene3D DnaJ domain 99 195 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3353 Ssu-Chr3 90352982 90353837 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3353 108 175 C2H2 Transcription Factor Family AT1G74250 36.111 6.11e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3353 K23051 - gmx:100819309 387.497