Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3343 atGGCAGGCGGGATGAGTACGCAGCTTCCGTGCGACAGCGACGGCGTGTGTATGGTGTGCAGGGCCGTGCCTGTGGAGGAAGAGAGGCTCCTATGCGTCACGTGCGACACTCCTTGGCACGTGCCATGTCTGTCCGCCCCTCCATCCACTCTTGCTGCCACCACTCGCTGGCTATGTCCTGATTGTTCTGATCCGCACCCTGAGGTCCCACCAGTCCCCGCTCCCGTCCGCAACGACCTCGTCGCTGCAATGCTGGCCGTAGAAAATGACGCTTCTCTCACTCAAGAACAAAAAGCCAGAAAACGTCAAGAGCTCATCACCGGAAAAACTCCCGCAGAAGACGAAGGAGACGACAAAGAGGAACCGAATAAGGCGTCTGTATCCGATATTCTTACTCGATCTCTCAACTGCTCCATCTGTATTCAGTTACCGGAGAGACCCGTCACGACTCCGTGTGGACACAGTTTCTGTTTGAAGTGTTTTGAGAAATGGGTTCGGCAGGGAAAGAGGAATTGTGCCAAGTGCCGGCAGATTATTCCAGCGAAGATGACAAGCCAGCCTCGAATCAATTCTGCATTGGTATTTGCAATACGTATGGCAAGGGCGGCATCTAACGGTAATGGTGGCAGCGGCGGACTACGGAGTGTTAACCATTTTTTGCACAATCAAGATAGGCCTGATCAGCCATTTACTACGGAACGTGCACAGCGGAATGGTCGTGCAAATGCAGCAAGTGGAAAAATTTTCGTGACAGTACCTACGGATCATTTTGGTCCAATCACGGCCGAAAATGACCCTATGCGGAATCAGGGTCTGCTGGTAGGTGAAAGTTGGAGAGACAGACTGGAATGCAGACAATGGGGTGCTCACTTCGTCCCTGTGGGTGGCATTGCCGGACAATCGGATCGCGGAGCACAATCTGTTGTTCTTTCTGGTGGTTATGTGGATGACGAGGATCATGGAGAGTGGTTTCTCTACACTGGAAGCGGCGGTAAGGATCTTAGCGGCAACAAACGCACCAACAAGAGTCACTCTTTTGACCAGAAGTTTGAGAAGTACAACCGTGCACTTCAAGTTAGTTGTCTCCAGGGTTATCCCGTTCGAGTTGTCAGATCTCACAAAGAAAAGCGGTCCTCATATGCCCCCGAGACTGGTGTGCGGTATGATGGAATTTATAGAATTGAAAAGTGCTGGCAGATAGCGGGATTGCAGGGTTTCAAAGTTTGCCGGTATCTATTTGTTAGGTGTGACAATGAACCTGCCCCTTGGACAAGTGATGATCATGGAGATAGGCCTAGACCCTTGCCGGTCATTCGTGAACTGAAGAAGGCTACAGTCATATTTGAGAGGACCGAGACTCCATCTTGGGATTTTGATGAGGAAGATTCTCGTTGGAAGTGGAAGAAACCTCCACCTCCCAGCAGACAAAAGGTACAAAATCAGGAACCTGTAGAGGTAGCAAGGGCAAAATCAAATAGAGAAATAAGGAAATTCCAACTTAAGTCAATCAAGGAACAATTGCAGAGAGGGTTCTCATGCATGATATGCAGGGAGGTTATGGTTTCACCAGTGACAACACCGTGTGCTCATAACTTCTGCAAGTCTTGTTTGGAAGGTGCATTTGCTGGTCAGGCATTTGTGAAGGAGAGAAGTAGGGGTGGGAGAACGCTTCGGTcccaaaaaaatgtaatgaaatgTCCGTCTTGCTCTATTGACATTTCTGATTATCTTCAGAACATTCAGGTTGATGTAGATTTGAAGAGTGCAATTGAGTCATTGAAAGCCAAGGTTGAAGAAATTGGAGAATCAGTGGAATCAAGTGAAGATACAGATGGATTACAGGATGATGACGCTGGCAAGGATGAAGATACTGACTCGGTGAACAAAAATTCTGTAGAGGAGTTGAATGGTCTACCTGAAGGATCTGATGTTGGTGAGCTTAAAGATACCAATAAGGGGCCAGATCCAGCAGTGAAGTGCAAtgcaaagagaaagaaagATCATTGA 2007 0.4768 MAGGMSTQLPCDSDGVCMVCRAVPVEEERLLCVTCDTPWHVPCLSAPPSTLAATTRWLCPDCSDPHPEVPPVPAPVRNDLVAAMLAVENDASLTQEQKARKRQELITGKTPAEDEGDDKEEPNKASVSDILTRSLNCSICIQLPERPVTTPCGHSFCLKCFEKWVRQGKRNCAKCRQIIPAKMTSQPRINSALVFAIRMARAASNGNGGSGGLRSVNHFLHNQDRPDQPFTTERAQRNGRANAASGKIFVTVPTDHFGPITAENDPMRNQGLLVGESWRDRLECRQWGAHFVPVGGIAGQSDRGAQSVVLSGGYVDDEDHGEWFLYTGSGGKDLSGNKRTNKSHSFDQKFEKYNRALQVSCLQGYPVRVVRSHKEKRSSYAPETGVRYDGIYRIEKCWQIAGLQGFKVCRYLFVRCDNEPAPWTSDDHGDRPRPLPVIRELKKATVIFERTETPSWDFDEEDSRWKWKKPPPPSRQKVQNQEPVEVARAKSNREIRKFQLKSIKEQLQRGFSCMICREVMVSPVTTPCAHNFCKSCLEGAFAGQAFVKERSRGGRTLRSQKNVMKCPSCSIDISDYLQNIQVDVDLKSAIESLKAKVEEIGESVESSEDTDGLQDDDAGKDEDTDSVNKNSVEELNGLPEGSDVGELKDTNKGPDPAVKCNAKRKKDH 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3343 668 ProSiteProfiles Zinc finger RING-type profile. 137 176 IPR001841 -
Ssu3g3343 668 MobiDBLite consensus disorder prediction 94 126 - -
Ssu3g3343 668 SUPERFAMILY RING/U-box 130 183 - -
Ssu3g3343 668 Pfam RING-type zinc-finger 513 567 IPR027370 -
Ssu3g3343 668 Pfam SAD/SRA domain 270 418 IPR003105 -
Ssu3g3343 668 ProSiteProfiles YDG domain profile. 267 415 IPR003105 -
Ssu3g3343 668 SUPERFAMILY RING/U-box 505 594 - -
Ssu3g3343 668 MobiDBLite consensus disorder prediction 93 126 - -
Ssu3g3343 668 SMART PHD_3 16 63 IPR001965 -
Ssu3g3343 668 MobiDBLite consensus disorder prediction 604 621 - -
Ssu3g3343 668 SUPERFAMILY PUA domain-like 241 439 IPR015947 -
Ssu3g3343 668 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 6 633 - -
Ssu3g3343 668 MobiDBLite consensus disorder prediction 460 482 - -
Ssu3g3343 668 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 6 633 IPR045134 -
Ssu3g3343 668 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 492 614 IPR013083 -
Ssu3g3343 668 ProSiteProfiles Zinc finger PHD-type profile. 14 65 IPR019787 -
Ssu3g3343 668 Pfam Zinc finger, C3HC4 type (RING finger) 137 175 IPR018957 GO:0046872
Ssu3g3343 668 SUPERFAMILY FYVE/PHD zinc finger 6 70 IPR011011 -
Ssu3g3343 668 ProSitePatterns Zinc finger PHD-type signature. 17 62 IPR019786 -
Ssu3g3343 668 Gene3D - 238 436 IPR036987 -
Ssu3g3343 668 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 201 IPR013083 -
Ssu3g3343 668 MobiDBLite consensus disorder prediction 599 668 - -
Ssu3g3343 668 SMART G9a_1 262 419 IPR003105 -
Ssu3g3343 668 Coils Coil 590 610 - -
Ssu3g3343 668 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 74 IPR013083 -
Ssu3g3343 668 ProSiteProfiles Zinc finger RING-type profile. 513 570 IPR001841 -
Ssu3g3343 668 MobiDBLite consensus disorder prediction 645 668 - -
Ssu3g3343 668 CDD RING-HC 137 175 - -
Ssu3g3343 668 ProSitePatterns Zinc finger RING-type signature. 528 537 IPR017907 -
Ssu3g3343 668 SMART ring_2 17 62 IPR001841 -
Ssu3g3343 668 SMART ring_2 137 175 IPR001841 -
Ssu3g3343 668 SMART ring_2 513 569 IPR001841 -
Ssu3g3343 668 MobiDBLite consensus disorder prediction 211 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3343 Ssu-Chr3 90241634 90246941 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3343 4 604 C2H2 Transcription Factor Family AT5G39550 58.007 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3343 K10638 - gmx:100801535 1221.45