Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3339 ATGCAACCCACATCCAGCGGCGGACTGGCTAGGTTCCGCTCAACTCCGGCGAGCTGGTTAGAGGCAGTTCTTCtgaaggaggaagaagaagaagaagaaaacgaAGACCCCTTAAGTTTCACTCAGCTGCTTTCCACTATCACTGCTGCTCCCTCTCAACATCAACACTATGGGATTGGGGATTACCCTTCCACGGCTATGCCTATGCCTATGCCTATGCCCATACCCAATTCAATCACACACAAGGAAGTTGAGCGTGGCCGTAGTGGTACTGGTACTGGTAAAGCACCCGACATGAAAATGGACAACATGTTAGAGGATTCGGTACCTTCTAGTGTTCGGGCAAAGCGTGGCTGTGCTACGCATCCCAGGAGTATTGCTGAAAGGGTTCGCAGGACTCGTATCAGTGACCGCATAAGAAAGCTTCAAGAACTTGTGCCAAACATGGATAAggtcttatttttcatcttaaacCACTATAACATCAAATGTTTCTTCCAACATCAACAAATAATTCACTTCAAATCTTATTGCCCCTACAACTCACCATACACCACCATCAAATGTCATAAACACAACATTTCATATCATTTACATATGAATTCTTGTATCAAATTTACTTGCAAAGATATTACCTTAagaattcaattcatttataaaCCATTTTGTGCTGTATTTCATCATTTGTAA 690 0.3942 MQPTSSGGLARFRSTPASWLEAVLLKEEEEEEENEDPLSFTQLLSTITAAPSQHQHYGIGDYPSTAMPMPMPMPIPNSITHKEVERGRSGTGTGKAPDMKMDNMLEDSVPSSVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKVLFFILNHYNIKCFFQHQQIIHFKSYCPYNSPYTTIKCHKHNISYHLHMNSCIKFTCKDITLRIQFIYKPFCAVFHHL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3339 229 Gene3D - 111 193 IPR036638 GO:0046983
Ssu3g3339 229 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 94 151 - -
Ssu3g3339 229 PANTHER TRANSCRIPTION FACTOR BHLH117-RELATED 94 151 - -
Ssu3g3339 229 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 151 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3339 Ssu-Chr3 90205750 90206704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3339 6 155 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G35460 42.000 1.63e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu3g3339 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3339 - - vun:114169578 156.762