Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3328 ATGGCCCAGCAGTCATCTAGGCTACAGCGTTTGCTTACTCTCCTGGACACTGGGTCAACCCAAGCAACAAGGTTGACTGCTGCTCGTCAGATAGGGGACATTGCAAAATCACACCCTCAAGACTTGACCAGTCTTCTTAAGAAGGTTTCTCAATATCTGTGCAGTAAAAATTGGGATACAAGAGTTGCAGCTGCTCATGCAATTGGGTCAATTGCTGAGAATGTTAAGCACATAAGTTTGACTGAACTTTTTGCTTCTGTTGTATCAAAAATGTCTGAGAATGGAATATCTTGTAGCATTGAGGATCTGTGTGCATGGccttatttacaatcaaaaaTTACAGGAAGCTCATTTAGAAGCTTTGATATGAACAAGGTGCTTGAATTTGGAGCCTTATTAGCATCGGGAGGACAGGAATATGATATtggaaatgataatataaagaaCCCAAAGGAGCGTTTGGTTCGTCAGAAGCAAAATCTTCGACGTCGTTTAGGTTTGGATGTCTGCGAACAATTTATGGATATCAGTGATGTAATAAGAGATGAAGATCTTATGGCATCCAAATCAGACTCACATCTGAATGGAATAGATCGTAGAGTTTTTACATCTTGTTCTATACATAACATCCAGAAAATGGTTGCAAACATGGTTCCTAGTGTCAAATCAAAGTGGCCAAGTGCAAGAGAACTGAATCTTTTAAAGcgtaaagcaaaaataaattctaaggACCAAACAAAAAGCTGGTGTGAAGATGGAAGTACAGAGGCATCAGGTGCTCAAAATTTGACTCCAAAAGGCACATATCCTGATTCAGTAAATTATAGTAagGCATTCATGGATGTTAATCATGATGAAGATGGCTTTGAGCATGATGGGGATGGACAATGGCCTTTCCACACTTTTGTTGAGCAACTTATTATTGATATGTTCGATCCTGTTTGGGAGGTACGACATGGTAGCGTGATGGCATTGAGAGAGATTTTAACACATCAAGGTGCTTCTGCTGGAGTATTTAAACATGACTCACGCATGGCTGGGACCttgtttattgaattagaagacaaaagtatatcaaatatattgaagagagagagggaaattGATTTAAACATGCAAGTTTCAGAAGATGAGTCTGTTTCAAACTTAAAGAGGCCAAAACTTGAAGATGTGTCATCATCAACCTCTATGGATAGTGTGATGACTTGCAGCAATGAAGGTGATATTGAAATCAGCATTAGTTCTGAAACCCATGGATGCAATTTAACTTTGGATTACGGGAATGGGCAATTAAATGGTAATTCTGTTGACATGGATCTGGAATCTTACTCTGATTGCTTACGTGATGCTTGTAAGGGGCCTGCTAATATAGCAGAGCAGAGGGGTCATTCTGATGACAATAAGATTCCCTCTGGAAATCTTAATGTGCTGAGAAATCTTCCTCAGAATTGTGAACTGATGAGCTCGGTTAAAGTGGCCAGAAGTTCCTGGCTTCGAAACTGTGAATTTCTTCAAGACTGTGTGATACGCTTTTTGTGTGTCTTGTCACTGGATCGCTTTGGAGATTATGTTTCTGATCAGGTTGTTGCTCCAGTGCGTGAAACCTGTGCACAGGCATTAGGTGCTGCATTTAAGTACATGCATCCAGCACTAGTAAATGAAACATTGAACATTTTGTTGAAAATGCAGTGTAGGCCAGAATGGGAGATTCGTCATGGCAGTCTTCTTGGTATCAAATATTTGGTTGCTGTTCGACAGGAGATGCTTTCTGATTTGCTTGGACATGTTCTTCCTGCTTGTAAATCTGGGTTGGAGGACCCAGATGATGATGTCCGAGCAGTTGCTGCTGATGCTTTGATACCAGCTGCAGCTGCAATTGTTTCCTTGCAGGGTCAAACATTACATTCAATTGTGATGCTTTTATGGGATATATTGCTtgatttggatgatttaagtcCATCCACTAGCAGTGTAATGAATCTGCTGGCAGAAATATATTCTCAAGAAGAGATGGGTCCAAAGatgtataaagtttttaaattgggaGACAAGGAAATGGAAAATGGAGTTGGTGGTTGTGGTGACaatgaaggagaagaaaatCCTTATGTGCTTTCAACATTGGCACCACGTTTGTGGCCCTTTATGAGGCATAGTATCACATCTGTTCGTTATTCTGCAATACGGACTTTGgaGAGGCTACTTGAAGCTGGATATAAGAGAAGCATGTCTGAGTTGTCTAGTGCTTCATTCTGGCCCTCTTATATATTTGGAGATACCCTTAGAATTGTCTTCCAGAATCTGCTTTTGGAAACAAACGAGGATATTTTGCAATGTTCTGATAGAGTTTGGAGTCTCCTTGTTCAGTGTTCTGTGGAGGACTTGGAGATGGCTGCGAGGTCTTACGTGGCTTCTTGGATAGAACTTGCGTCTACACCATTTGGCTCAGCATTAGATGCCTCAAAGATGTATTGGCCTGTTGCCTTTCCACGGAAAAGTCAAATTAGAGCAGCTGCTAAAATGAGAGCTGCAAAACTTGAAAATGAATGTGGTGTGgattttagttttgattctaCAAAAGTAACTATTCCTCAAGATAGAAATGGAGATGTTCCTATGATTTCTGTTAAGATAGTTGTTGGTGCTGATGTGGACACATCTGTAACTCATACCCGGGTAGTTACGGCAACTGCTTTGGGAATTTTTGCTTCTAAGCTGCCAGAGGGTTCCTTAAAATATGTGATTGATCCACTGTGGAGCTCTCTAACCTCGTCGTCTGGTGTCCAACGCCAGGTTGCATCTATGGTACTTATTTCTTGGTTCAAGGAGATTAAGAACAGGAATTCGTCCAAAAACCTTGATGGTATCCCTGGTACTCTCAAAGATTGGTTGCTGGACTTATTAGCATGTTCTGACCCAGCATTCCCAACAAAAGATTCACTTCTTCCTTATGCTGAGCTTTCCAGAACTTATGCAAAGATGCGTAGTGAGGTTGGTCAATTGCTAAATGCAGTCAAGTCTTCTGGTATGTTTAATGAGTTATTGACAGAGACCCAAATTGAGTTGGATCGCTTGAGTGTGGATGATGCCATTGGTTTTGCATCAAAAATTCCAGCACTGTGTAATGATAGTTCTGCAAATGAATCCTTGGGAAAGAACATTATGGATGATATTGAATCCTCCAAACAGAGGCTCTTGACAACTTCTGGATATTTAAAATGTGTTCAGAGTAATTTGCATGTTACAGTCACATCTGCAGTTGCATCTGCAGTTGTCTGGATGTCTGAATTTCCTACACGGCTTACCCCAATCATTTTGCCTTTGATGGCTTCAATCAAACGAGAGCAGGAGGAAATACTGCAAATAAAGTCAGCTGAGGCCCTTGCCGAGCTAATGTATCACTGTGTTGCACGTAGACCTTGCCccaatgataaattaattaagaatatatgtAGTTTAACTTGCATGGATCCCTCTGAGACCCCTCAAGCCAAATCCCTTTGCACCATGGAGAGTATTGATGACCAAGGTCTTCTGTCTTTTAGAACACCTGTGAGCAAACAGAAGTCAAAGGTCAATGTGCTGGCCGGTGAAGATCGGTCAAAGGTGGAGGGATTTTTAAGTAGACGTGGATCTGAGCTGTCATTGAGGCTTCTATGTGAAAAATTTGGTGCATCATTATTTGATAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAAGTGCTTAAGCCCAGCTCCTCTGAATCTCTACTTGTCACTAATGAAAAGCAAGTTACTGTGTCTATTGAGTCTGTTAGTGATCCTCAGACCTTGATTAACAATATCCAGGTGGTGCGCTCTATTGCTCCCGTGTTAAATGAGGAGTTGAAGCCAAAACTGTTGACACTTCTCCCATGCATTTTCAAATGTGTTCAGCATTCTCATGTTGCAGTTAGATTAGCGGCTTCACGCTGCATCACTTCCATGGCCCAAACTATGACTGTGAAAGTTATGGGAGCTGTGGTTGAAAATGCTATCCCTATGTTGGAAGATGCATCTTCAGTTTATGCTCGACAAGGAGCAGGCATGTTGATTAGTTTTCTTGTTCAGGGGCTGGGTGTGGAGTTGGTCCCTTATGCTCCTCTATTGGTGGTTCCACTTCTAAGGTGCATGAGCGATTGTGATCAGTCTGTCAGACAGAGTGTGACCCATAGTTTTGCTGCTCTTGTACCTTTACTTCCTTTGGCGCGAGGCCTTCCTCAACCGATTGAATTAGGGGAAGGCGTATCTAGAAATGCAGAAGATTTGCAGTTTTTGGAGCAGCTACTTGACAACTCTCATATTGAAGACTACAAGTTGTGCGCCGAATTGAAAGTAACATTGAGGAGGTATCAGCAGGAAGGCATAAATTGGTTAGCTTTTTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGACTTGGAAAGACACTTCAAGCATCAGCAATTGTGGCCTCTGATATAGCTGAGCATCGAACTTCAATTGGGAATGAGGATCTTCTGCCATCTTTAATTATTTGCCCATCAACTCTAGTTGGGCACTGGGCCTTTGAGATAGAGAAGTATATTGATGTTTCTGTTATATCTAGTCTTCAATATGTCGGTTCTGCTCAGGATCGAATGCTTCTTCGAGATCATTTTTGCAAGCATAATGTCATCATAACGTCATTTGATGTTGTTCGTAAAGATATTGATTTTTTGGGACAGCTGCTGTGGAATTACTGCATTTTAGATGAAGGGCATATAATCAAGAATGCCAAGTCTAAAGTTACACTTGCTGTAAAGCAGTTGAAAGCCCAACACCGCTTGATTTTGAGTGGGACACCTATACAGAATAACATAATGGACTTATGGTCCCTTTTTGATTTTCTGATGCCTGGATTCCTTGGAACTGAGAGACAGTTCCAAGCCACGTATGGAAAACCGCTTTTAGCTGCAAGAGATCCTAAATGCTCTGCTAAGGATGCTGAAGCAGGAGCACTTGCTATGGAGGCATTGCATAAGCAGGTAATGCCTTTCCTCCTTCGTAGGACAAAGGATGAAGTCTTGTCTGATCTGCcagaaaaaataattcaagacAGATACTGTGATTTGAGCCCTGTACAACTTAAACTTTATGAACAGTTTTCTGGTTCTCATGCAAAACAAGAAATGTCATCTATTGTAACAACGAATGAGTCTGCTGCAGCCGAAGGAAGTAGCAGTTCTACTAAAGCGTCTTCACATGTTTTCCAGGCGCTCCAATACTTGCTAAAACTCTGTAGTCATCCATTGCTTGTCATTGGTGAGAAGATTCCAGATTCACTGTCTAGCATCCTCTCAGGACTCTTTCCTGCTGGCTCTGATGTTATTTCAGAACTTCACAAACTCTATCACTCCCCAAAATTAGTTGCTCTTCATGAGATTCTTGAAGAGTGTGGAATTGGAGTTGATAATTCAGGTTCTGAGGGTGCGGTTAATGTTGGGCAGCATAGGGTCTTGATATTTGCTCAACATAAGGCTTTCCTGGATATAATTGAAAGAGATTTGTTTCACACACACATGAAAAGTGTCACATATTTGCGGTTGGATGGATCAGTTGAGCCAGAAAAGCGTTTTGAAATTGTTAAAGCCTTCAATTCAGACCCTACCATTGATGTCTTACTGCTCACAACccatgATTCAACTCTAGTGGCTATGGATAGAGCACACAGGTTAGGTCAGAAAAAAGTGGTTAATGTCCATCGGCTAATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGTCTACAAAGGTTCAAAGTGTCAGTGGCTAATGCTGTCATTAATGCGGAAAATGCTAGTATGAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCAGCAGAAACCTCCAAGAAGGGGGCATCTGTTGCGAAGAGTTCAGAGAACAACTCTGATGGAGACGCTAAATTAGTAGGCAGTGGGAAGGGATTGAAATCAATACTTGGGGGATTGGAGGAGCTATGGGACCAATCACAATATACAGAGGAGTACAATCTGAGTCAATTTTTAGCAAGGCTTAATGGCTAA 6084 0.4007 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLTSLLKKVSQYLCSKNWDTRVAAAHAIGSIAENVKHISLTELFASVVSKMSENGISCSIEDLCAWPYLQSKITGSSFRSFDMNKVLEFGALLASGGQEYDIGNDNIKNPKERLVRQKQNLRRRLGLDVCEQFMDISDVIRDEDLMASKSDSHLNGIDRRVFTSCSIHNIQKMVANMVPSVKSKWPSARELNLLKRKAKINSKDQTKSWCEDGSTEASGAQNLTPKGTYPDSVNYSKAFMDVNHDEDGFEHDGDGQWPFHTFVEQLIIDMFDPVWEVRHGSVMALREILTHQGASAGVFKHDSRMAGTLFIELEDKSISNILKREREIDLNMQVSEDESVSNLKRPKLEDVSSSTSMDSVMTCSNEGDIEISISSETHGCNLTLDYGNGQLNGNSVDMDLESYSDCLRDACKGPANIAEQRGHSDDNKIPSGNLNVLRNLPQNCELMSSVKVARSSWLRNCEFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALVNETLNILLKMQCRPEWEIRHGSLLGIKYLVAVRQEMLSDLLGHVLPACKSGLEDPDDDVRAVAADALIPAAAAIVSLQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMGPKMYKVFKLGDKEMENGVGGCGDNEGEENPYVLSTLAPRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSELSSASFWPSYIFGDTLRIVFQNLLLETNEDILQCSDRVWSLLVQCSVEDLEMAARSYVASWIELASTPFGSALDASKMYWPVAFPRKSQIRAAAKMRAAKLENECGVDFSFDSTKVTIPQDRNGDVPMISVKIVVGADVDTSVTHTRVVTATALGIFASKLPEGSLKYVIDPLWSSLTSSSGVQRQVASMVLISWFKEIKNRNSSKNLDGIPGTLKDWLLDLLACSDPAFPTKDSLLPYAELSRTYAKMRSEVGQLLNAVKSSGMFNELLTETQIELDRLSVDDAIGFASKIPALCNDSSANESLGKNIMDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVASAVVWMSEFPTRLTPIILPLMASIKREQEEILQIKSAEALAELMYHCVARRPCPNDKLIKNICSLTCMDPSETPQAKSLCTMESIDDQGLLSFRTPVSKQKSKVNVLAGEDRSKVEGFLSRRGSELSLRLLCEKFGASLFDKLPKLWDCLTEVLKPSSSESLLVTNEKQVTVSIESVSDPQTLINNIQVVRSIAPVLNEELKPKLLTLLPCIFKCVQHSHVAVRLAASRCITSMAQTMTVKVMGAVVENAIPMLEDASSVYARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPQPIELGEGVSRNAEDLQFLEQLLDNSHIEDYKLCAELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAEHRTSIGNEDLLPSLIICPSTLVGHWAFEIEKYIDVSVISSLQYVGSAQDRMLLRDHFCKHNVIITSFDVVRKDIDFLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQATYGKPLLAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSHAKQEMSSIVTTNESAAAEGSSSSTKASSHVFQALQYLLKLCSHPLLVIGEKIPDSLSSILSGLFPAGSDVISELHKLYHSPKLVALHEILEECGIGVDNSGSEGAVNVGQHRVLIFAQHKAFLDIIERDLFHTHMKSVTYLRLDGSVEPEKRFEIVKAFNSDPTIDVLLLTTHDSTLVAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFASAETSKKGASVAKSSENNSDGDAKLVGSGKGLKSILGGLEELWDQSQYTEEYNLSQFLARLNG 2027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3328 2027 Gene3D - 1898 1993 IPR027417 -
Ssu3g3328 2027 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1687 1965 IPR027417 -
Ssu3g3328 2027 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1434 1686 IPR027417 -
Ssu3g3328 2027 CDD DEXHc_Mot1 1454 1686 IPR044078 GO:0005524
Ssu3g3328 2027 Gene3D - 1208 1414 IPR011989 -
Ssu3g3328 2027 Gene3D - 1696 1897 IPR027417 -
Ssu3g3328 2027 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1466 1636 IPR014001 -
Ssu3g3328 2027 CDD SF2_C_SNF 1801 1920 - -
Ssu3g3328 2027 Pfam SNF2-related domain 1472 1768 IPR000330 GO:0005524|GO:0140658
Ssu3g3328 2027 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 1959 IPR044972 GO:0003677|GO:0016887|GO:0017025
Ssu3g3328 2027 Pfam Domain of unknown function (DUF3535) 783 1237 IPR022707 -
Ssu3g3328 2027 Gene3D - 4 92 IPR011989 -
Ssu3g3328 2027 SUPERFAMILY ARM repeat 6 1493 IPR016024 -
Ssu3g3328 2027 MobiDBLite consensus disorder prediction 245 269 - -
Ssu3g3328 2027 MobiDBLite consensus disorder prediction 251 269 - -
Ssu3g3328 2027 Gene3D - 1426 1685 IPR038718 -
Ssu3g3328 2027 Gene3D - 499 678 IPR011989 -
Ssu3g3328 2027 SMART ultradead3 1450 1647 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3328 Ssu-Chr3 90002513 90027288 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3328 1449 1964 RAD5 or RAD16-like Gene Family AT1G02670 24.221 2.38e-30 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu3g3328 DUF3535 4.7e-106 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3328 K15192 - gmx:100777977 3666.32