Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3326 ATGGCAGCTTTTCTCCTTAAACACTCCTTCTGCCACCTCtttattgttttccttttttgtcttcCAGCCATAAACACACTCTCCACTGTTTCCATTTCTGAAACTTTGAATTCCAAGCAAATATTTATTTGCGTCTTGCAACATCCAAACCAACAAGGACAATCAAATCTCAACTGCAGCAGCTTTCCTGAGGCTCAGGGTATTACACTTGAAGTGAATCGTAATGTTTCCTACACCCAGATTGTGGGCGGCAACGGGTTTGTATGTGCTTTAGGGCCATCATCTTCTTCCGTGTCCATCATGGGCTGTTGGAGATTCTCTGCCAATACTACGAATGTTGTTCCCTATAAGCGCGTCTACCGTGGACCCCTTGTTGAAGATATTGACGGTGGCAGCTCCCACGTTTGTGGTCTTGTAAAAAAAGGGAATAATAATAGCCTCGGCCTTGAGTGTTGGCCATGGCGTTGGTTCAATTCAAGCACTGCCAGGAGCATGTCAATGTCCATGTCAAGCGTTGCCGTAGGAGAGAATTTCGTATGTGGCTTATCACAGAGGGGGGACGTTAATTGCGCGGGCACAGGGAGGGGCAATAGTAGAGTTGTTGCTGATGCGCCTGCGCATGGTGGGAACTACATTTTTCTCGCAGCTGGGATTAGGCATGCCTGTGCCATCTCTCGTGATGGTAGCTTGCATTGTTGGGGCGACGTGGAGGGTCAGAAACCACAAGGGAGTTTCCTTTCTTTGGCGTTGGGAGAGAACCGAAGCTGTGCACTTGGGTACGACAGAAAAGTTGTGTGTTGGGGGTCCAATAATTTCAGCATGCCACCCGGATTGCAAGACACTTTTTTTGAGTCAATTGTTGCAAAGCGAAGTGTTTTCTGCGGAGTTGTGTCTTCTAATTATTCCTTGTTTTGTTGGGGTTCCCAAATATTCGAGTCAGACAGCAAGGTGTTTGACGATGTCCTCCCAGGACCTTGTAGGAACGCGTGTCCGTGTGGGCCCTCGCCAAATTCTGCCAAACTATGTAATTCTCCTGCCATCATTTGCCAACCCTGTTCCCCTCAATTAGTTCAATCTACATCTCCATTGCAGCCACCACCGTCATCACAAGACACTAGTTGGAGCAGCAAAATGGTGGCATTTCTAGTGGTTGGATGTGTGGGTTGCAGTTCCCTGTTGCTAGTCATAGCTTTCTTCCTTTACAGGTGCTGCAACTCCAAACGCAGGGGAAGCCGAGTCCATGACTCGGGGCGGTTGGATGAGTCCGGTAGCCAGCCACAAGCCGAAGCTGAAGCAGGATCTCGAGTTCTTCAGAAGCGTTTGAGCCACGTGATCAGCATGGGAAATGGGAGCCCTCTGGAGGAGTTTTCCCTGGAGACACTGCTTCAAGCCACCAACAATTTCTGCGAGGACAACAAAATTGGGATTGGCAGCTTCGGTTCCGTGTATCGTGCCACGCTCGAGGGCGGCAAGGAGGTTGCTATCAAAAGAGCCGAagcctcctcctcctccactTACACAGTTTTGGGTGGCCAAGTCGACAAAGACAATGCCTTTGTGAACGAGCTTGAATCTCTCTCAAGACTCCACCACAAGAACCTGGTACGCTTGCTGGGCTTCTATGAAGACACCAAGGAACGCATTTTGGTGTACGAGTACATGAACAATGGCAGCCTCACCGATCATCTCCACAAGCTCCAAACTTCAGCTCTCATGTCATGGCCAGTTCGCATTAAGGTTGCTCTAGATGCCGCCAGAGGCATAGAGTACCTACACCAATACGCCACTCCACCCATTATTCACCGTGACATCAAGTCTGCCAACATATTATTGGATGCCAAGTGGACCGCCAGAGTCTCTGATTTTGGACTCTCACTCATGGGCCCTGATCCAGAAGATGAGGAGGCCCACCTTTCGCTTCTAGCCGCTGGCACTGTTGGCTACATGGACCCTGAATACTATAGGCTTCAGCATTTGACCCCCAAGAGTGACGTGTACAGCTTTGGCGTCGTTTTGCTAGAGTTGCTCTCTGGCTACAAAGCCATCCATAAAAACGAGAATGGGGTGCCAAGAAATGTGGTGGATTTTGTGGTGCCGTTCATTGCTCAAGATGAGATTCACAGGGTGTTGGACAAAAGAGTGCCCCCACCCACACCGTTTGAGATAGAGGCCGTGGCGTTTGTGGGTTATTTGGCAGCAGATTGTGTTAGACTAGAAGGTCGAGATAGACCCACTATGTCTCAAGTTGTAAATAACTTGGAAAGAGCATTGGCTGCATGTTTAGCCCAACCAATACTGTCAAGGTCCACCACTGATTCTTCACAATAA 2328 0.4828 MAAFLLKHSFCHLFIVFLFCLPAINTLSTVSISETLNSKQIFICVLQHPNQQGQSNLNCSSFPEAQGITLEVNRNVSYTQIVGGNGFVCALGPSSSSVSIMGCWRFSANTTNVVPYKRVYRGPLVEDIDGGSSHVCGLVKKGNNNSLGLECWPWRWFNSSTARSMSMSMSSVAVGENFVCGLSQRGDVNCAGTGRGNSRVVADAPAHGGNYIFLAAGIRHACAISRDGSLHCWGDVEGQKPQGSFLSLALGENRSCALGYDRKVVCWGSNNFSMPPGLQDTFFESIVAKRSVFCGVVSSNYSLFCWGSQIFESDSKVFDDVLPGPCRNACPCGPSPNSAKLCNSPAIICQPCSPQLVQSTSPLQPPPSSQDTSWSSKMVAFLVVGCVGCSSLLLVIAFFLYRCCNSKRRGSRVHDSGRLDESGSQPQAEAEAGSRVLQKRLSHVISMGNGSPLEEFSLETLLQATNNFCEDNKIGIGSFGSVYRATLEGGKEVAIKRAEASSSSTYTVLGGQVDKDNAFVNELESLSRLHHKNLVRLLGFYEDTKERILVYEYMNNGSLTDHLHKLQTSALMSWPVRIKVALDAARGIEYLHQYATPPIIHRDIKSANILLDAKWTARVSDFGLSLMGPDPEDEEAHLSLLAAGTVGYMDPEYYRLQHLTPKSDVYSFGVVLLELLSGYKAIHKNENGVPRNVVDFVVPFIAQDEIHRVLDKRVPPPTPFEIEAVAFVGYLAADCVRLEGRDRPTMSQVVNNLERALAACLAQPILSRSTTDSSQ 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3326 775 SUPERFAMILY RCC1/BLIP-II 86 310 IPR009091 -
Ssu3g3326 775 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 22 773 IPR044815 GO:0004674
Ssu3g3326 775 Gene3D Phosphorylase Kinase; domain 1 428 553 - -
Ssu3g3326 775 PANTHER OJ000114_01.11 PROTEIN 22 773 - -
Ssu3g3326 775 MobiDBLite consensus disorder prediction 409 432 - -
Ssu3g3326 775 SUPERFAMILY Protein kinase-like (PK-like) 443 753 IPR011009 -
Ssu3g3326 775 Pfam Regulator of chromosome condensation (RCC1) repeat 214 235 - -
Ssu3g3326 775 Gene3D Transferase(Phosphotransferase) domain 1 554 763 - -
Ssu3g3326 775 Pfam Protein kinase domain 470 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3326 775 CDD STKc_IRAK 474 755 - -
Ssu3g3326 775 Gene3D - 63 319 IPR009091 -
Ssu3g3326 775 ProSitePatterns Protein kinases ATP-binding region signature. 474 496 IPR017441 GO:0005524
Ssu3g3326 775 SMART serkin_6 468 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3326 775 ProSiteProfiles Protein kinase domain profile. 468 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3326 775 ProSitePatterns Serine/Threonine protein kinases active-site signature. 599 611 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3326 Ssu-Chr3 89991351 89993678 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3326 26 771 Receptor kinase-like Gene Family AT5G47850 50.260 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Ssu3g3326 Pkinase 2.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3326 - - pvu:PHAVU_011G003100g 1295.8