Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3322 ATGGATTACTCATTCAGTGCCAATACGTGTGAGATAGTGGAAACAAGGGAAGAGATCATTTCTGAGTTCAAAATAGATGAAAAGCCTGAAAGTAGTAGTGCCCGCAAATCAGGAAAAAAGTATTCTATACAGGATGATATCAATCGTCTTTTGCATgctattgatattaaaaattcagATAGAGATCTTAATACACCATGTTCACAGAAGAATGCTCTTAAAAAGCCCATAAAAGCCACTTCATCTCAGGCATCAGGAACAGGAATTGGCCTCTCGGAACCTTTAAGTTTGAAGCAGGCATTTAGAGGGTTGTGCATCTCACAGGCATCAGAAATGGCTGCATTGAAGCGACTATCAAAGCCATCCACTTCGTCAAGAGTATCAGAGGCTGGAACCATCAAAAACTTGTACACAGCAGTAGGAGATGAAAGACAAGGGGACTTGGTGGAATTCTCCCTTGTGCCAGAGATATCTAGACCTTCTGATAAATTGGGCTGCAATGAGAATCATAAGATATCAAATTCAAGTGCTGCTCATCATTCTACTCCTTTTGGTAATGCAACACATCCAAAAACAATGCCAACCAGATCATCACACCGAAACCAAATTGTCCCTCTTTCATCAGAGGTTCAGGGTGAGAAGCTAGTCACAAGGCTTGAAAAACAGGTACTAGCAGATTCATCATCTGCTTCCTATCTTATTAATGAAGTGCTGGAGCTGGAGATTGGACTCAAAACGCTCCCTGATTCCTCCAGCAAAGATTCTCTCCATTCTTCAATGCCAGATAAGGGGATGGAAGCAAAGTTAATTTCTCCATCTAGTTCTGGCACAGGTAATGGGGTGGATAAACCCacaagtagtaatatgtcattGGCAAAGCCAATATTTAAGGACAAGAACTTTCTTAAGAAGAAAGTGAAGCAAGATTTATGCTCTTCGTCGAGCAGCTCCATTCCATGTACCAGAAAAAATGGCAATGATTTGGCTTCCAGTACAAGTAATTTGAAAAAGGTGACTGACAATTCTGATTCAAAGAATGACATGAAAGAAAACGAGAAACTGTCCTTTGGCCATTCAAACCATAGCAGTGAAGTTTACTCAGTTAATATTGGCAAGGATTCAAGCAAACCTGGTTTCTGTTTGACAGGCAATAAGAGAACTAGGTTTCTAGTATCAAAATTTGATGAGAAAACAATATCAAAGGAAAAGAGTGAATTCTCACAAAGTTCAAAAAGTAGCATTGTTGATTATCGTAGTATCAGTAGGAAGAGCAATCTTAGTGGTTCTAGTTGCAGTGGGCACAGGCCTCACATGTCAAAACACACGAGATGGGAAGCAGTTCGTGTTATTGAGCAGCAGCATGGTAATTTAAGTTTGAAGAACTTCAAGCTGCTCAGTAGGCTTGGTTGTGGGGACATTGGAACTGTTTATCTTGCCCATCTAATTGGTACGAGCAGCCTTTTTGCACTGAAAGTGGTGGAGAATGACTTTTTGGTAAACCAGAAGAAAATGTTCAGGGCCCAAACTGAGAGAGAGATCCTGCAGATGCTGGATCACCCATTTCTTCCTACACTTTATGCCCATATTGCAACAAATAAGCTCTCTTGCTTGGTTATGGAGTATTGTCCAGGTGGAGATCTGCATGTGCTGCGCCAGAGGCAACCATCTAAGAGTTTCTCAGAACAAGCAACCAGGTTTTATGTTGCTGAAGTTCTCCTTGCCCTGGAGTATTTGCACATGCTAGGAGTTGTATATAGAGACCTAAAGCCAGAAAATATCCTGGTACGAGAAGATGGTCACATTATGCTTACGGATTTTGACTTGTCACTCAGATGTCGTGTCAATCCAATGTTGGTGAAGTCATCTTCACCAAATGTGGATCCAACAAAGATGTCCAGTTCCTGTTCGGAGGTAAACTGCATGCACCCTTTCTGTCTCCAACCAGATTGGCAAGTCCCCTGTACTCCTATTCTATTATCAGGTGGAGCAAAATCTCGAAAAATTAAGGCTGAAATAGGTGCTCAGGTTGGTCCACTGCCACAGCTTGTAGTGGAGCCTACCAGTGCTCGATCAAACTCGTTTGTTGGAACCTATGAATACCTTACTCCTGAAATCATAAAAGGTGAGGGTCATGGGAGTGCTGTAGATTGGTGGACTTTAGGTATATTATTGTTTGAGCTTTTATATGGTAAAACTCCCTTCAAGGGCCATACCAATGAAGATACATTAGCCAATGTTGTGTCACAGAGCCTTAAGTTCCCAGATGCTCCTATAGTCAGTTTTCGAGCAAGAGATTTGATCAGACGATTGTTGATAAAAGACCCTCAAAGTCGATTAGGTTCTGTAAAAGGTGCTGCTGAAATAAGGCATCATTCCTTCTTTGAAGGCCTCAACTGGGCTCTTATACGCTGTACACCACCACCCGAGCTCCCCAAATTTCGTGATTTTGGAACTAGTCTTCAATCCATGGAGAATGCCAACCATTTAGTGGATACACCAGATTGTGAAGAGTTTGACCTGTTTTAG 2526 0.4121 MDYSFSANTCEIVETREEIISEFKIDEKPESSSARKSGKKYSIQDDINRLLHAIDIKNSDRDLNTPCSQKNALKKPIKATSSQASGTGIGLSEPLSLKQAFRGLCISQASEMAALKRLSKPSTSSRVSEAGTIKNLYTAVGDERQGDLVEFSLVPEISRPSDKLGCNENHKISNSSAAHHSTPFGNATHPKTMPTRSSHRNQIVPLSSEVQGEKLVTRLEKQVLADSSSASYLINEVLELEIGLKTLPDSSSKDSLHSSMPDKGMEAKLISPSSSGTGNGVDKPTSSNMSLAKPIFKDKNFLKKKVKQDLCSSSSSSIPCTRKNGNDLASSTSNLKKVTDNSDSKNDMKENEKLSFGHSNHSSEVYSVNIGKDSSKPGFCLTGNKRTRFLVSKFDEKTISKEKSEFSQSSKSSIVDYRSISRKSNLSGSSCSGHRPHMSKHTRWEAVRVIEQQHGNLSLKNFKLLSRLGCGDIGTVYLAHLIGTSSLFALKVVENDFLVNQKKMFRAQTEREILQMLDHPFLPTLYAHIATNKLSCLVMEYCPGGDLHVLRQRQPSKSFSEQATRFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCRVNPMLVKSSSPNVDPTKMSSSCSEVNCMHPFCLQPDWQVPCTPILLSGGAKSRKIKAEIGAQVGPLPQLVVEPTSARSNSFVGTYEYLTPEIIKGEGHGSAVDWWTLGILLFELLYGKTPFKGHTNEDTLANVVSQSLKFPDAPIVSFRARDLIRRLLIKDPQSRLGSVKGAAEIRHHSFFEGLNWALIRCTPPPELPKFRDFGTSLQSMENANHLVDTPDCEEFDLF 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3322 841 PANTHER FLIPPASE KINASE 1-RELATED 6 824 - -
Ssu3g3322 841 SMART serkin_6 462 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3322 841 Pfam Protein kinase domain 463 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3322 841 Pfam Protein kinase domain 691 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3322 841 MobiDBLite consensus disorder prediction 312 355 - -
Ssu3g3322 841 MobiDBLite consensus disorder prediction 67 89 - -
Ssu3g3322 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 583 595 IPR008271 GO:0004672|GO:0006468
Ssu3g3322 841 ProSiteProfiles Protein kinase domain profile. 462 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3322 841 CDD STKc_phototropin_like 460 817 - -
Ssu3g3322 841 Gene3D Transferase(Phosphotransferase) domain 1 542 610 - -
Ssu3g3322 841 MobiDBLite consensus disorder prediction 173 198 - -
Ssu3g3322 841 SUPERFAMILY Protein kinase-like (PK-like) 437 817 IPR011009 -
Ssu3g3322 841 MobiDBLite consensus disorder prediction 312 339 - -
Ssu3g3322 841 MobiDBLite consensus disorder prediction 248 290 - -
Ssu3g3322 841 MobiDBLite consensus disorder prediction 340 355 - -
Ssu3g3322 841 Gene3D Phosphorylase Kinase; domain 1 460 541 - -
Ssu3g3322 841 MobiDBLite consensus disorder prediction 270 290 - -
Ssu3g3322 841 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL1 ISOFORM X1 6 824 - -
Ssu3g3322 841 Gene3D Transferase(Phosphotransferase) domain 1 688 812 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3322 Ssu-Chr3 89958461 89961641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3322 7 817 AGC Kinase Gene Family AT3G52890 45.186 0.0 651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Ssu3g3322 Pkinase 5.8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3322 - - ccaj:109798461 1322.38