Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3321 ATGACTCCAGTTAATTTGGCAGGGCAGTTTGGAGACACCACATACACTAAGGTGTTTGTTGGAGGCTTGGCCTGGGAGACTCAAAAGGAGACCATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCCACTGGAAGATCTAAAGGCTATGGATTTGTTACTTTTCGCGAACCAGAAGCTGCCATGAGAGCTTGCGTGGATGCTGCTCCTGTAATCGACGGTAGGAGAGCCAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAGCATGGAGGAGCAGGGAGGAACTTTAGAGTAATGGGTTCTTTCCAGACAGGATTTGGAGGGGGAGTGGGATCGGCTTTTCCTTCAGCAGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATGGTGTGTATGGAGGAGCAACAGCACAGTACCCAGTTTATGGAAGCGGACCAGGAGGGATGATGACGGGTGCTGCGGCGTTCTACCCATATCTGCAGTACGGAGAAGGGAGCGGCGGCGGCAGTACCGGCGGCTATACTTCCGGGCAGGGTTATGGTGTGAACTACCCTCCTCAGCTGTTTCAGTATTCTCCCATTGCTTCCACTGGTGGGTATGCCCAGCACTATGGAACACCCATGTCTCTTGCTCCTTCCCCTGCCTTGCAATCAGGCGTGACCATGCCTCTTCAAGCTCCAATTCCTCATCGCTAG 807 0.5118 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGAGRNFRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGVYGGATAQYPVYGSGPGGMMTGAAAFYPYLQYGEGSGGGSTGGYTSGQGYGVNYPPQLFQYSPIASTGGYAQHYGTPMSLAPSPALQSGVTMPLQAPIPHR 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3321 268 SUPERFAMILY RNA-binding domain, RBD 15 103 IPR035979 GO:0003676
Ssu3g3321 268 Gene3D - 7 112 IPR012677 -
Ssu3g3321 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Ssu3g3321 268 PANTHER BOULE-RELATED 1 263 IPR037366 GO:0003729
Ssu3g3321 268 PANTHER OS01G0876800 PROTEIN 1 263 - -
Ssu3g3321 268 SMART rrm1_1 17 89 IPR000504 GO:0003723
Ssu3g3321 268 CDD RRM_RBM24_RBM38_like 16 91 - -
Ssu3g3321 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3321 Ssu-Chr3 89944603 89949036 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3321 12 195 C2H2 Transcription Factor Family AT2G19380 31.553 2.64e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3321 - - adu:107477578 452.595