Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3318 ATGGCGGCCCGGGCTTATGACTCTGCGGCTTTCTTCTTGAAAGGAACCTCTGCTACCCTTAATTTCCCCGACCACGTTCACTCCCTGCCTCGCCCTCTCTCTTCCTCCCGGAGAGACATACAATCCGCCGCTGCTAAAGCCGCTCTCCACCCTCCGCCCCCCAAAACGGAGATTCACTGGTGGGACCATTTGGGAGAAGAAGACTCCGTTATCTCCACGACGTCGTTTCAGGATGTCAAGGAAGCTCCTCTTATGAGCCCCCTTAGGGTAGACTCCACTTTTGGAGATTTCTCGTGGAACCAACTCTTCGACTTCAATGATGACATTCTCATGATGGAATCAGCATCCACTCTTGCTTAG 360 0.5306 MAARAYDSAAFFLKGTSATLNFPDHVHSLPRPLSSSRRDIQSAAAKAALHPPPPKTEIHWWDHLGEEDSVISTTSFQDVKEAPLMSPLRVDSTFGDFSWNQLFDFNDDILMMESASTLA 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3318 119 MobiDBLite consensus disorder prediction 31 54 - -
Ssu3g3318 119 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042 1 59 - -
Ssu3g3318 119 Gene3D AP2/ERF domain 1 24 IPR036955 GO:0003700|GO:0006355
Ssu3g3318 119 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3318 Ssu-Chr3 89859677 89860036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3318 1 52 AP2-EREBP Transcription Factor Family AT5G11590 61.538 8.38e-13 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3318 K09286 - gmx:100783790 158.688