Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3317 ATGGCTTCTTCTAATGGTGGTGTGCCTCCAGGATTTAGATTTCATCCAACGGATGAAGAGCTGCTTCATTACTACTTGAAGAAGAAGGTGTCCTTTCAAAAGTTTGATATGGATGTTATTAGAGAGGTCGACTTGAACAAGATGGAGCCTTGGGACTTGCAAGCAGAAAGATGTAGAATTGGATCAACTCCACAAAACGAGTGGTATTTCTTCAGTCACAAGGATAGAAAGTACCCTACCGGTTCAAGGACCAATAGAGCAACAAATGCAGGGTTTTGGAAAGCAACGGGAAGAGATAAATGCATTAGGAATAGCTATAAGAAGATTGGAATGAGAAAAACGCTTGTGTTTTACAAAGGCAGAGCTCCTCATGGACAAAAGACTGATTGGATCATGCATGAGTACCGCCTAGAAGATGGCAATGATCCTCAAGGAAATGCCAATGAAGACGGCTGGGTGGTGTGCAGAGtgttcaagaagaagaatttattCAAGATTGGAAATGAAGGTGGCTCTACACATAATCCAGATCAACAAATCAACAATTCCTCAAGCACTAATGCACGCTCCTTCATACATAGAGAAAACCATTACTTACTACATCAACAACAAAATCCTAGGAACTCATCGGGGCTTGAGCTTAATAAGCCTGAGCTTTCTCTCCACTACCCACACTTGCAAAACCCTCAATACTCATTCTTCCAATCCCAACCTCTTCTTCAAACCCAAAAACCTATGGTTTATGATTATTCATATACATCATCTTTACCTTCAGACACCCGTATCATGGCAAAGCAACTCATGACAAACCCTAGAGACTGTGAGAGCGGTAGTGACGGCCTAAGATACCAAGTTTCGGAGTCTGGTATGGAAGTTGGCTCGTGTGAGCCAAATCAAGAAATAGGTGCCGGAAGAGGTGAAGGAATAAACGAATGGGGTGTCCTGGATAGGCTAGTGACCTCTCATCTTGGAAATGAAGAATCAACCAAAGGGGTCAGGTTTGAGGAGGCAAATCCACAATCTGTCCACCAGATCAACCAACTTACATTACGGGGAGAGACGGACTTCTGGGCCTATGGAAAACAATGA 1089 0.4252 MASSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQAERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDGNDPQGNANEDGWVVCRVFKKKNLFKIGNEGGSTHNPDQQINNSSSTNARSFIHRENHYLLHQQQNPRNSSGLELNKPELSLHYPHLQNPQYSFFQSQPLLQTQKPMVYDYSYTSSLPSDTRIMAKQLMTNPRDCESGSDGLRYQVSESGMEVGSCEPNQEIGAGRGEGINEWGVLDRLVTSHLGNEESTKGVRFEEANPQSVHQINQLTLRGETDFWAYGKQ 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3317 362 ProSiteProfiles NAC domain profile. 8 160 IPR003441 GO:0003677|GO:0006355
Ssu3g3317 362 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 295 - -
Ssu3g3317 362 SUPERFAMILY NAC domain 7 160 IPR036093 GO:0003677|GO:0006355
Ssu3g3317 362 PANTHER PROTEIN BEARSKIN2-LIKE 5 295 IPR033519 -
Ssu3g3317 362 Pfam No apical meristem (NAM) protein 9 137 IPR003441 GO:0003677|GO:0006355
Ssu3g3317 362 Gene3D NAC domain 17 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3317 Ssu-Chr3 89838487 89841393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3317 1 356 NAC Transcription Factor Family AT1G33280 55.956 1.43e-125 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu3g3317 NAM 3.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3317 - - gmx:100804181 699.123