Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3314 ATGGTGGTCAACGAGAGACCCTCGAAGAGGATGAAGAGGAGGGTCACAGCTGATCTCTATGATTTTCTCAGTTTTCCGGCGGCCGGCGGCGCCTCCTCCGGTGAACCCTTCCGGAACTGTGTTCAGCGCTTCCTCTCCGACCACGCTCGCATCACTTTCCCTCCCTCGCTCTTTCCGTCCCTTATGACGTGGCAGATCTTATTCCGTGTAGGAGACCTCGTCGACGGGCCCGATCTCTCGCCCGCCATGGTCGCTCTCGACATTGTCGAGGAGGATGTCACTCGTTCTCGTTCTTCGGTCTACTGTGACCAGTGCCGAGTCGTTGgATGGAGTGGGCATCCGGTGTGTCGAAAGCGATACCATTTCATAATAAGGGCTGCAAGTAACGCCGTCGAAGCATACCAAAGACCTTGTTCAAGATGTGGAAATCTTGTCCAATTATCTGAAACAAGGTGTAGATCATGTAACTTCTCGATCACTGTTGATGACCTTGAGGACTGGGTGTATCTTCAGATTGAAGATAGCACCCATCTTCTGCATGGTGTTGTCCATGCCAATGGTTATGGTCATCTGCTTACTCTTAATGGAAGAGAAGGTAGCTCGAAGCTTCTCTCTGGATCTGATATCATGGATTTCTGGGATAGGCTATGTGCTGCAATTTCTGTTAGGTCTGAATTACTCTACTTTCTCACATTTTGCATCGGGATGAGCTTGACCTTCATTTTTAAAGCTAACTGTGTTATATACTTGAGCAGGAAGGTTAGCGTGATGGATTTGTCCAAGAAATTTGGGCTGGAATACCGATTGCTTCATGGAATCACCAACGGACATTCCTGGTATGGCAATTGGGGTTATGAATTTGGAACTGGTAGCTATGCTCTTACCCAAGATGCGTACAAGAATGCAGCGAATACCCTATCAAGCATGCccttatcttcatttttattccATGGTCGTGGACCACGAAACCGCCTGCAGTGTGTCATTTCTCATTACCAGTCTTTGGCAGAAACTGAACTTCTAACGATTAAAGATCTCTTCTCCTTTTTGTTGACATTGGTTCATGAATGTCGTAAGCCCATGACCATGAGGGTATCTAAGCAGCATGAATACACTTGCACCAGTAATTTATTGTGTGCTTGGACGGAAAATGATGTTGAAGAGGTGCAACATGCTTTGATCAAGGTATTGCTTGCATCGTGTGCCTATACTGAGGACAAATGGGTGACAAGGCGTGCTCTCAAGGGTGCAGTATGCAGGGGTGTTTCATCTCCAGAGCTTCTAGACTACTGTCTTAAGCATTTGCCAGGGAAATTAGCTGCCAATGGAATGGTAGTTTATTCACGATGCAATCCCATTTCCAGTGCCATCGAATTCAGGTTGGAACCTTCGAGTAATGGATTGAGCGCTAATTCAAGCTATCCATCTGAAGAGCAAGTGATCTCTGATTTGACATTCTTATTTGATTCGATTATTCACCCTGACAAAATGGTGAGCTACAGACCTAAGATGACGAGGAAAAGGGTGGCTGATTCAGCCAGGAAGCTCCTTGACTGTAAACAGTTCATGAAGGATTACAAACCATATGAAATGGCCGTTGAACTGCCTTTAGTCATTAGGCTGTGGTGTCATGTGGAGCTTTCTGATCAGCCTAAGGATGATCCATCCCCCCCGCCAGAGCTAATTGTGTTACCTTTGAATGCAACCGTTGCTGACCTCAAGCGCGAAGCCACTAGTGCTTTTCAAGACGTGTATGCAATGTATAAGAGATTTCAAGCTGAGGAACTCCTAGGATATGGGTCAATCAGTGATTTGCTTACCGTGAAATTCTTGCTTGGAACAAAAGGATCAATCCAAATTCAAGGTAAATGCCCAGCCAAACATGGGCTAAGCCGATTCCGAATGGAACGAGGAACAGAGGTGTGGAAGGTTGATTGTACTTGCGGGGCTAAGGATGATGATGGAGAGAAAATGTTAGCATGTGATACCTGTGGCGTTTGGCAGCATACCAGATGTGCTGGAATTGATAATTCTGATGGCATGCCTTCTAAGTTTGTTTGTATGAGATGTGTCAACTCGTACCGtgaagaaactaaaaaattaccAGCATCTGGTGAGGAAGCTAACGAGACCTGTAAATTCAACACATCTTGCAGAGATGAGGCAGTGGTAAGAGACTGTGCAACAGTTTCATGTAACATAGCTGTGAATTTTGGTGTAGCAGAGATGAGTGTATAG 2238 0.4513 MVVNERPSKRMKRRVTADLYDFLSFPAAGGASSGEPFRNCVQRFLSDHARITFPPSLFPSLMTWQILFRVGDLVDGPDLSPAMVALDIVEEDVTRSRSSVYCDQCRVVGWSGHPVCRKRYHFIIRAASNAVEAYQRPCSRCGNLVQLSETRCRSCNFSITVDDLEDWVYLQIEDSTHLLHGVVHANGYGHLLTLNGREGSSKLLSGSDIMDFWDRLCAAISVRSELLYFLTFCIGMSLTFIFKANCVIYLSRKVSVMDLSKKFGLEYRLLHGITNGHSWYGNWGYEFGTGSYALTQDAYKNAANTLSSMPLSSFLFHGRGPRNRLQCVISHYQSLAETELLTIKDLFSFLLTLVHECRKPMTMRVSKQHEYTCTSNLLCAWTENDVEEVQHALIKVLLASCAYTEDKWVTRRALKGAVCRGVSSPELLDYCLKHLPGKLAANGMVVYSRCNPISSAIEFRLEPSSNGLSANSSYPSEEQVISDLTFLFDSIIHPDKMVSYRPKMTRKRVADSARKLLDCKQFMKDYKPYEMAVELPLVIRLWCHVELSDQPKDDPSPPPELIVLPLNATVADLKREATSAFQDVYAMYKRFQAEELLGYGSISDLLTVKFLLGTKGSIQIQGKCPAKHGLSRFRMERGTEVWKVDCTCGAKDDDGEKMLACDTCGVWQHTRCAGIDNSDGMPSKFVCMRCVNSYREETKKLPASGEEANETCKFNTSCRDEAVVRDCATVSCNIAVNFGVAEMSV 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3314 745 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 631 697 IPR013083 -
Ssu3g3314 745 PANTHER PHD FINGER PLANT-LIKE PROTEIN 245 714 - -
Ssu3g3314 745 ProSitePatterns Uncharacterized protein family UPF0054 signature. 180 190 IPR020549 -
Ssu3g3314 745 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 223 - -
Ssu3g3314 745 SMART PHD_3 645 691 IPR001965 -
Ssu3g3314 745 ProSitePatterns Zinc finger PHD-type signature. 646 690 IPR019786 -
Ssu3g3314 745 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 245 714 - -
Ssu3g3314 745 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 223 - -
Ssu3g3314 745 SUPERFAMILY FYVE/PHD zinc finger 635 693 IPR011011 -
Ssu3g3314 745 CDD PHD_MMD1_like 645 690 - -
Ssu3g3314 745 Pfam PHD-finger 646 692 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3314 Ssu-Chr3 89803975 89806995 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3314 80 690 PHD Transcription Factor Family AT5G22260 28.019 2.35e-80 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu3g3314 PHD 2.5e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3314 - - gmx:100780558 1275.38