Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3308 ATGGGGACCAAGGCAAAGAAAGCTATGAAGAAGAATTTGAAAAGGGTTACTACTAATAAGCCATCTGAGGATGTTGATTTTTTGCCCTTGGAAGGTGGTCCTGCTCGCAAACAACCCGAACAGAAGCCGCTGGAGAATACTGCCACGGTTTTGTATGTGGGTCGGATTCCACATGGATTCTATGAGAAGGAGATGGAAGGTTATTTTGGACAATTTGGAACCATCAAGAGATTGAGAATTGCGAGAAATAAAAGGACAGGAAAATCAAGACATTTTGGGTTCATAGAATTTGAATCTCCAGAGGTAGCAAAAATTGTAGCTCACACAATGCACAATTATCTCCTTTTTGAACACCTTCTCCAGGTTTATGTGATACCTCCGGAGCATGTTCATCCAAAATtATGGAGAGGATTCAATTACCGTCACAAGCCATTGGATTCAGTCCAAATTGAACGGAAGCGTCATGACAAGGAAAGAACATTGGAGGAGCACAAGAAGTTGGTGGAAAAGATTATAAAACATGACAAAAAACGACGTAAAAGGATAGAGTCTGTTGGCATTGATTATGAATGCCCCGAGATTGTGGGTAACATCCAGCCTGCtccaaagaaaataaagttcGAAGACTGA 630 0.4032 MGTKAKKAMKKNLKRVTTNKPSEDVDFLPLEGGPARKQPEQKPLENTATVLYVGRIPHGFYEKEMEGYFGQFGTIKRLRIARNKRTGKSRHFGFIEFESPEVAKIVAHTMHNYLLFEHLLQVYVIPPEHVHPKLWRGFNYRHKPLDSVQIERKRHDKERTLEEHKKLVEKIIKHDKKRRKRIESVGIDYECPEIVGNIQPAPKKIKFED 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3308 209 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 116 IPR000504 GO:0003723
Ssu3g3308 209 CDD RRM_NIFK_like 50 122 - -
Ssu3g3308 209 Coils Coil 150 170 - -
Ssu3g3308 209 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Ssu3g3308 209 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 1 208 - -
Ssu3g3308 209 MobiDBLite consensus disorder prediction 1 42 - -
Ssu3g3308 209 PANTHER - 1 208 - -
Ssu3g3308 209 Gene3D - 4 124 IPR012677 -
Ssu3g3308 209 SMART rrm1_1 50 123 IPR000504 GO:0003723
Ssu3g3308 209 SUPERFAMILY RNA-binding domain, RBD 26 138 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3308 Ssu-Chr3 89730598 89733019 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3308 49 122 Eukaryotic Initiation Factors Gene Family AT1G71770 33.784 7.06e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3308 K14838 - gmx:100778780 371.703