Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3304 ATGTCGTCCACCTCTCCGCCGTCGCATTCTCCTCTGGAACCCCACCAAAACGATCCCGCGCCGGGAACACCGTCATCGCTTGCCGGCAGAGCTAAGCTCCAGAAGATTCCGCCAATTCCAATGCGACGGAGTAAGGTATCAGCAAAGGTAGGCGATGAAGAGCAGGAAGAAGAGGAAGGTGAAAGTTCTTCCATCTTGCTCGCGTCGTCTCTAGGGCTCAATCACATTCGCACGCGCTCCTCTTCTTCGTCTCTTCGCTATTCGTCCTCCCTTGGCGCTCCTTCCTTCCTCACACGGGATGCTGTCACTATCAATGACGCAAGATTTAGATCCAAACCTTCCCATTCAAAAAAAGACCTAGGGGGAAAAGTTCGTTGGAGTCAATCCAAATCGCTGAAAGCTCATTCGAAACTCATTCCTGTGCTAGAGGGTCATCATGCGGCTTTCGCCAAAGAAATGCAATCCCCACGTTTTCAGGAAATACTGCGACTTACAAGTGGGCACAAAAAGAGACACCCTGATATTAAAAGCTTTTCCCATGAACTCAACTCCAAAGGAGTTAGACCATTTCCAATGTGGAAACATCGTGCCTTTGGCCACATGGAGGAAGTCATGGTGGCCATTAGAGCcaagtttgaaaaattaaaggaagaAGTTGATTCTGACTTGGGTGGTTTCGCTGGAGATTTGGTGGGcattcttgaaaaaaatttagtgtCTGATCGTGAATGGAGAGAGAGGTTGGAGGATCTGTTGGTTGTTGCTCAACAATGTGCCAAGATGTCTCCTACCCAGTTTTGGATCAAATGCGAATCTATTGTTCAAAATCTAGATGACAAACGTCAAGAATTACCAGTGGGGATACTCAAGCAAGCTCATACACGCCTACTGTTTATTCTCACTCGTTGCACTCGCCTAGTGCAATTCCAGAAGGAAAGCGGATATGAACAAGATCACATTCTGGGCCTTCACCAACTCAGCGATCTTGGGGTCTATCCTGAGCAAATTTTGAAGGCTGCACAGCAGAAATCCAGTATTACACCTGCTGGACATGAGATGGCTGAGGAGCAGTTAAATATGTCACATGGTAAAGAGAAAGACAAACTGATAACGAAACAAAGTCGAGCTGACCAACATGTAAGTGTTGCGACTGACAATCTAGAGGTTGATACAACCAAAAGTGTTGAATCAACTCCTGGAAGCTATAGGATGTCTTCTTGGAGAAAGCTTCCATCTGCTGCTGAGAAAAAGCGAAAGGGTCAAGATGCTGTAGATTTCCCATCCAAATGTGAACTGGATCATTTGCTAGTCAAAGATGAAAATGCTGAAAATTTGGATACTTTGTCATGTCATCCTGAACATTCACAAGCATCATCAAGAACGCGAAAGGTTTCTTGGGGATTCTGGGGAGATCAGCAAAATCTAACATACGAGGATTCAATGATATGCAGGATTTGTGAGGTTGAAATACCAATTGTACATGTGGAGGAGCATTCTCGAATATGCACAATTGCTGATAGATGTGATTTGAAGGGCTTAACGGTAAATGAACGGCTTGAAAGAGTTTCTGAAACCATTGAAAGGATACTGGAATCCTGGACACCAAAAAGCACACCAAAAAGCACTGATACTCCTGGAGAAAGCTTTGAGGTTGTCAGAGTGTCAACATCAAGTGTGCATGAAGCGTTCAATGATTTATCTCTAGAGAGAAATAACCTGACTTGTGGGTGCTCTGAAGATATGCTTGACTCTACTGCAGAACCTGACAATACTTTTGTCATGGAGGATCTGAACCTTTCACCCAGAATATCAAGTGAAGCACGCATCTGCTTAAAACCTGATCATGGAACAAAGGTATCTTCAGCTGGAAGCTTGACACCGAGATCACCATTGGTAACACCACGAACCACTCAGATAGAAATTTTACTAAGTGGACGAAGAACATTATCTGAACTTGAGAGTTCTGACCAGATAAACAAGCTAGTTGAAATAGCTCGAGCTGTTGCAAATGTAAACAACTGTGACTACAGTGCTCTGGAGTATATGCTTGATCGCTTAGATGACCTTAAGTATGCTATTCAAGACAGAAAAGTGGATGCACTTATTGTGGAGACTTTCGGACGACGAATAGAGAAACTTTTGCAGGAGAAATATATATCTCTTTGTGGGCAGATAGAAGATGAAAAGGTGGACTCATCAAATAGCATGGCTGATGAAGAGAGTTCAGTGGAAGATGATACAGTTCGTAGCCATCGTGCTAGCCCTATTAATGCTTGTTCCAAGGACCGAACCTCTATTGaagattttgaaataataaaaccaatAAGTAGGGGTGCATTTGGACGAGTTTTTCTTACCCGAAAAAGAGCAACTGGTGATTTATTTGCTATAAAGGTTCTGAAAAAGGCAGATATGATCCGTAAAAATGCAGTTCAAAGTATTTTGGCAGAGCGAGACATCCTTATATCTGTTCGAAACCCTTTTGTGGTCCGATTTTTCTACTCTTTCACATGTAGGGAAAATCTTTATCTAGTTATGGAGTATTTGAATGGTGGAGATCTTTATTCTATGTTGAGGAGTCTAGGTTGCTTAGATGAAGATATGGCTCGTGTATATATTGCAGAAGTTGTTCTTGCATTGGAGTATTTGCATTCCTTAAATGTGATTCACAGAGACTTGAAGCCAGATAACTTACTGATTGGTCAAGATGGTCATATTAAGTTGACAGATTTTGGGCTTTCTAAGGTTGGTCTTATCAACAGCACTGATGATTTATCAGCGCCATCATTTTCCACCAATGGTTTCCTAGGAGATGATGAACCAAAACCTCGACATTCTTCGAAAAGGGAAGAGCGTCAAAAACAATCAGTTGTTGGCACCCCGGATTATTTGGCACCTGAAATACTTCTTGGCATGGGACATGGTGCAACTGCAGATTGGTGGTCCGTGGGTGTCATACTTTATGAGCTTCTTGTGGGTATTCCACCATTTAATGCAGAACATCCACTGCAAATTTTTGATAACATAATTAACAGAGACATACAATGGCCCAAGATTCCTGAGGAGATCAGCTTTGAAGCATATGATTTGATAAATAAATTATTGAACGAAAATCCAGTCCAAAGATTAGGTGCAACAGGAGCTACAGAAGTTAAACGCCACGCTTTCTTCAAGGATATTAACTGGGATACCCTAGCAAGGCAGaagGCTATGTTCATTCCATCGGCTGAAGCTCTTGATACAAGTTATTTTATGAGCCGGTACATTTGGAATCCCGAGGATGAACATTGTCTTGGAGGTAGTGATTTTGATGAGATTACTGAAACATGCAGCAGTGGTTCAGGCAGCGATTTATTAGATGAAGATGGTGATGAATGCGGTAGTTTAGCAGAGTTCAGTGGTCCACCTCTTGAAGTGCAGTACTCATTTAGTAATTTCTCATTTAAGAACTTGTCTCAGCTAGCATCCATCAATTATGATCTGGTGATTAAGAACTCCAAGGAATCAACTCAATGA 3516 0.4181 MSSTSPPSHSPLEPHQNDPAPGTPSSLAGRAKLQKIPPIPMRRSKVSAKVGDEEQEEEEGESSSILLASSLGLNHIRTRSSSSSLRYSSSLGAPSFLTRDAVTINDARFRSKPSHSKKDLGGKVRWSQSKSLKAHSKLIPVLEGHHAAFAKEMQSPRFQEILRLTSGHKKRHPDIKSFSHELNSKGVRPFPMWKHRAFGHMEEVMVAIRAKFEKLKEEVDSDLGGFAGDLVGILEKNLVSDREWRERLEDLLVVAQQCAKMSPTQFWIKCESIVQNLDDKRQELPVGILKQAHTRLLFILTRCTRLVQFQKESGYEQDHILGLHQLSDLGVYPEQILKAAQQKSSITPAGHEMAEEQLNMSHGKEKDKLITKQSRADQHVSVATDNLEVDTTKSVESTPGSYRMSSWRKLPSAAEKKRKGQDAVDFPSKCELDHLLVKDENAENLDTLSCHPEHSQASSRTRKVSWGFWGDQQNLTYEDSMICRICEVEIPIVHVEEHSRICTIADRCDLKGLTVNERLERVSETIERILESWTPKSTPKSTDTPGESFEVVRVSTSSVHEAFNDLSLERNNLTCGCSEDMLDSTAEPDNTFVMEDLNLSPRISSEARICLKPDHGTKVSSAGSLTPRSPLVTPRTTQIEILLSGRRTLSELESSDQINKLVEIARAVANVNNCDYSALEYMLDRLDDLKYAIQDRKVDALIVETFGRRIEKLLQEKYISLCGQIEDEKVDSSNSMADEESSVEDDTVRSHRASPINACSKDRTSIEDFEIIKPISRGAFGRVFLTRKRATGDLFAIKVLKKADMIRKNAVQSILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSMLRSLGCLDEDMARVYIAEVVLALEYLHSLNVIHRDLKPDNLLIGQDGHIKLTDFGLSKVGLINSTDDLSAPSFSTNGFLGDDEPKPRHSSKREERQKQSVVGTPDYLAPEILLGMGHGATADWWSVGVILYELLVGIPPFNAEHPLQIFDNIINRDIQWPKIPEEISFEAYDLINKLLNENPVQRLGATGATEVKRHAFFKDINWDTLARQKAMFIPSAEALDTSYFMSRYIWNPEDEHCLGGSDFDEITETCSSGSGSDLLDEDGDECGSLAEFSGPPLEVQYSFSNFSFKNLSQLASINYDLVIKNSKESTQ 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3304 1171 ProSiteProfiles Protein kinase domain profile. 769 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3304 1171 Pfam Protein kinase domain 769 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3304 1171 ProSiteProfiles AGC-kinase C-terminal domain profile. 1058 1158 IPR000961 GO:0004674|GO:0005524|GO:0006468
Ssu3g3304 1171 Gene3D Phosphorylase Kinase; domain 1 767 1084 - -
Ssu3g3304 1171 MobiDBLite consensus disorder prediction 392 423 - -
Ssu3g3304 1171 CDD STKc_MAST_like 775 1062 - -
Ssu3g3304 1171 MobiDBLite consensus disorder prediction 938 956 - -
Ssu3g3304 1171 PANTHER SERINE/THREONINE PROTEIN KINASE IRE-RELATED 28 1170 - -
Ssu3g3304 1171 ProSitePatterns Serine/Threonine protein kinases active-site signature. 888 900 IPR008271 GO:0004672|GO:0006468
Ssu3g3304 1171 MobiDBLite consensus disorder prediction 930 957 - -
Ssu3g3304 1171 SMART serkin_6 769 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3304 1171 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 1170 - -
Ssu3g3304 1171 Gene3D Transferase(Phosphotransferase) domain 1 853 1075 - -
Ssu3g3304 1171 MobiDBLite consensus disorder prediction 1 64 - -
Ssu3g3304 1171 SUPERFAMILY Protein kinase-like (PK-like) 766 1084 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3304 Ssu-Chr3 89669075 89680070 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3304 33 1171 AGC Kinase Gene Family AT5G62310 64.585 0.0 1463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Ssu3g3304 Pkinase 3.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3304 - - gmx:100817975 2058.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3304 3 89669075 89680070 Ssu3g3304 3 89669075 89680070 ECH