Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3301 ATGGCATTGTACGCTCTCGATGGAAGTTCAACGTCTTGCCAAAATCTCTTTAGAATCCTTCTATCACTTCTATTCATCTCAACCTTTCTCCAATTGGCAGCCAAATCCACAACCACCACCGATTCCCTCAAAGCCTACAAAAAGTTCATAAAAGATCAGTGCAATTCAACCACTTACCCAAATGTTTGCTACAAGTCTCTCTCCCCTTATacatcaaaaatcaaaacaaaccGCGTAACACTCACCAAAGTGTCTATTTATGTGGCTCTAAAAGCAGCCAAAAGTGCATCTAGCACATTGACAAAGCTATCCAATTCCAAGGGGAAGCTAACACATGGAGAAACGTTGGTGATTGCCGATTGCCGAGAGAATATTGAGGACGCGGTGGATCTACTTGAGCAATCTGCCGATGGGCTGGCACATTTGAATGGTACCACTACTAGTCATGACAAATTTCAATGGGATAACATAAAGACATGGATGAGTGCTGCCATAACAGATGAGACTACATGCACGGATGAGTTTGACGAAATACAAGTGCGTCCTTCACTGCAGAAGAAGATCAAAACCAGTGTTGATAACGTTCATTGGTTGAATAGCAATGCCTTGGCATTCGTCAACAGGCTTCCCTTATAA 636 0.4151 MALYALDGSSTSCQNLFRILLSLLFISTFLQLAAKSTTTTDSLKAYKKFIKDQCNSTTYPNVCYKSLSPYTSKIKTNRVTLTKVSIYVALKAAKSASSTLTKLSNSKGKLTHGETLVIADCRENIEDAVDLLEQSADGLAHLNGTTTSHDKFQWDNIKTWMSAAITDETTCTDEFDEIQVRPSLQKKIKTSVDNVHWLNSNALAFVNRLPL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3301 211 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 47 209 IPR035513 -
Ssu3g3301 211 TIGRFAM PME_inhib: pectinesterase inhibitor domain 21 208 IPR006501 GO:0004857
Ssu3g3301 211 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR 9 209 - -
Ssu3g3301 211 SMART PMEI_2 45 205 IPR006501 GO:0004857
Ssu3g3301 211 PANTHER PECTINESTERASE INHIBITOR-LIKE 9 209 - -
Ssu3g3301 211 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 210 IPR035513 -
Ssu3g3301 211 CDD PMEI-like_3 54 210 - -
Ssu3g3301 211 Pfam Plant invertase/pectin methylesterase inhibitor 48 204 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3301 Ssu-Chr3 89647726 89648361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3301 50 209 Carbohydrate Esterase AT1G53830 28.750 8.55e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3301 - - gmx:100776299 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3301 3 89647726 89648361 Ssu3g3301 3 89647726 89648361 ECH