Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3300 ATGGAGGCCATTTCTTCTAAGCGTCTCATCACATCCCTTCTCATAATTCTTGCTTCTAGTTTTACCACACACTCTGCCAACGAAAGACCATACCAAGAAGTTAGCACAGTGTTCATTAGAACTTCTTGTAGCTCCACAACTTATCCAAGACTCTGCTACAGCTCCCTAGTGAAGCATTCAGATTTGATCCAAACAAATCGTGTGCTTTTGACGGGCACAGCCCTGAATGTGACTCTTGCATCTGCCAAATCGACCTCGACAATGATGTCAAGGCTGGCAAAGAGCCGGGGGCTGAAGCCGAGAGAGGTTGCAGCGACGAAGGACTGTGTGGAGCAACTGGGTGACTCTGTGGATGAACTCCGAAGGTCTATTGATGAGATGAATCATCTAAGAGCCTCCAATTTTGAGATAACAATGAGTGACGTACAAACATGGGTCAGTGCTGCTTTGACTGATGCGAGCACGTGCACTGATGGCTTCCAAGAGACTGCCACTGATGGTACAGATATTAAGACCACTGTGAGAGGACAAGTTGTGCAGGTAGCCCAATTGACTAGCAATGCCTTGGCTTTGATAAATCAGCTAGCCAATTCCCATGGTTAA 603 0.4677 MEAISSKRLITSLLIILASSFTTHSANERPYQEVSTVFIRTSCSSTTYPRLCYSSLVKHSDLIQTNRVLLTGTALNVTLASAKSTSTMMSRLAKSRGLKPREVAATKDCVEQLGDSVDELRRSIDEMNHLRASNFEITMSDVQTWVSAALTDASTCTDGFQETATDGTDIKTTVRGQVVQVAQLTSNALALINQLANSHG 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3300 200 Coils Coil 110 130 - -
Ssu3g3300 200 PANTHER 21 KDA PROTEIN-LIKE 11 195 - -
Ssu3g3300 200 CDD PMEI-like_3 41 197 - -
Ssu3g3300 200 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 195 IPR035513 -
Ssu3g3300 200 SMART PMEI_2 34 191 IPR006501 GO:0004857
Ssu3g3300 200 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 195 IPR006501 GO:0004857
Ssu3g3300 200 PANTHER PECTINESTERASE INHIBITOR-LIKE 11 195 - -
Ssu3g3300 200 Pfam Plant invertase/pectin methylesterase inhibitor 38 191 IPR006501 GO:0004857
Ssu3g3300 200 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 197 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3300 Ssu-Chr3 89623771 89624373 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3300 26 198 Carbohydrate Esterase AT3G14310 32.768 2.07e-22 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3300 - - gmx:100305537 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3300 3 89623771 89624373 Ssu3g3300 3 89623771 89624373 ECH