Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3299 ATGAATCATCTAAGAGCCTCCAATTTTGAGATAACAATGAGTGACGTACAAACATGGGTCAGTGCTGCTTTGACTGATGCGAGCACGTGCACTGATGGCTTCCAAGAGACTGCCACTGATGGTACAGATATTAAGACCACTGTGAGAGGACAAGTTGTGCAGGTAGCCCAATTGACTAGCAATGCCTTGGCTTTGATAAATCAGCTAGCCAATTCCCATGGTTAA 225 0.4489 MNHLRASNFEITMSDVQTWVSAALTDASTCTDGFQETATDGTDIKTTVRGQVVQVAQLTSNALALINQLANSHG 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3299 74 PANTHER PECTINESTERASE INHIBITOR-LIKE 2 71 - -
Ssu3g3299 74 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 71 IPR035513 -
Ssu3g3299 74 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 11 70 IPR035513 -
Ssu3g3299 74 CDD PMEI-like_3 1 71 - -
Ssu3g3299 74 Pfam Plant invertase/pectin methylesterase inhibitor 7 65 IPR006501 GO:0004857
Ssu3g3299 74 PANTHER 21 KDA PROTEIN-LIKE 2 71 - -
Ssu3g3299 74 TIGRFAM PME_inhib: pectinesterase inhibitor domain 13 69 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3299 Ssu-Chr3 89603773 89603997 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3299 14 65 Carbohydrate Esterase AT5G53370 46.154 1.27e-10 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3299 - - gmx:100305537 114.39