Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3295 ATGCATGAGTATCGGCTTGAAACAGATGAAAATGGCACATCACAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAGAAGAGAGTAACAACCATGCGTAAAGTGAGTGAGCACGACTCCCCCTGTTGGTATGATGACCAAGTCTCTTTCATGCAAGACTTGGACTCACCAAAGCAAACCTCTCAATCTAATTTGGTCTACCAGCTACCATATCCTTGCAAGAAAGAGCTAGATTTGCCATATCAAATACCTCGCGACCACTTTCTCCAGCTTCCACTTTTAGAGAGCCCAAAATTGCTTCAATCTGCTTCTGCCATGACCCCTATTCCCATGGCAGCATATGTTCTAGATCATGTAAACCATTCTACTACTCTGCTTCCCTCATCACTAATACAAGAAGAACAGGTTGGTCTGCAAAACTTTCAGGCAACGTATGGCAACAACAGTTCCAATGAACAAGCAGTGGATCAAGTAACTGATTGGCGAGTATTTGACAAGTTCGTTGCTTCACAACTTAGTCAAGATGCATCCAAAGACAATACCTACACAAACACTACAGACAATATCTTTCACGGCACGGACAATGGCAATTGCAATGTACAGTTCAGACATTTGGACAAACAAGAAATAGCGGTGCCTGAAGAAAATGCCTCAACATCAAACGCCAGCTGCCCAATTGATTTGTGGAAATAG 693 0.4286 MHEYRLETDENGTSQEEGWVVCRVFKKRVTTMRKVSEHDSPCWYDDQVSFMQDLDSPKQTSQSNLVYQLPYPCKKELDLPYQIPRDHFLQLPLLESPKLLQSASAMTPIPMAAYVLDHVNHSTTLLPSSLIQEEQVGLQNFQATYGNNSSNEQAVDQVTDWRVFDKFVASQLSQDASKDNTYTNTTDNIFHGTDNGNCNVQFRHLDKQEIAVPEENASTSNASCPIDLWK 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3295 230 Gene3D NAC domain 1 31 IPR036093 GO:0003677|GO:0006355
Ssu3g3295 230 ProSiteProfiles NAC domain profile. 1 27 IPR003441 GO:0003677|GO:0006355
Ssu3g3295 230 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 219 - -
Ssu3g3295 230 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 1 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3295 Ssu-Chr3 89533643 89534971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3295 1 230 NAC Transcription Factor Family AT1G12260 40.833 4.53e-40 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3295 - - gmx:100809525 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3295 3 89533643 89534971 Ssu3g3295 3 89533643 89534971 ECH