Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3294 ATGGCTCGCGGAAAGGTTCAGCTGAAGCGAATTGAGAACACGGTGCACAGACAAGTTACCTTCTGCAAGCGCCGAGCAGGGCTTCTTAAGAAGGCTAAGGAGCTCTCTGTGCTGTGCGATGCTGAAATTGGCCTTGTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTAGCCACCAATGGAACCATGCAAGGGCTCATTGAGAGGTACATGAAGTTCACACAAGGGGCTCAGCCTGAAGCAGCACCTGAAGCACATCCTCTGGATGCAAAAGAGGAAACCAATGTGctaaaacaacacatccaaacaTTGCAAAAGGGTATCAGGTATTTGGTTGGAGGAGGAAATAAGACAATGACAATGGATGAATTACAAGTGCTAGAGAAGAATCTCGAAATTTGGATATATCATATTCGTTCAATGAAGATGAACATCATGTTACAAGAAATTCAAGCTTTGAAAGATAAGGAGGGAACACTTGAAGCGGCAAATAAATATCTCCACGAGAAGATTGTGGAGAACACTGTAGTTTCTAGCTTTGCCCCATTTGCTACTGATACTTCGTACCCGCTAATTATACAAGATGATGTTTTTCAACTCTATTAA 606 0.4175 MARGKVQLKRIENTVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELATNGTMQGLIERYMKFTQGAQPEAAPEAHPLDAKEETNVLKQHIQTLQKGIRYLVGGGNKTMTMDELQVLEKNLEIWIYHIRSMKMNIMLQEIQALKDKEGTLEAANKYLHEKIVENTVVSSFAPFATDTSYPLIIQDDVFQLY 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3294 201 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu3g3294 201 Gene3D - 14 78 IPR036879 GO:0003677|GO:0046983
Ssu3g3294 201 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu3g3294 201 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu3g3294 201 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu3g3294 201 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Ssu3g3294 201 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu3g3294 201 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Ssu3g3294 201 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 199 - -
Ssu3g3294 201 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu3g3294 201 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Ssu3g3294 201 Pfam K-box region 90 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu3g3294 201 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu3g3294 201 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3294 Ssu-Chr3 89500809 89513722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3294 1 200 MADS-box Gene Family AT1G71692 59.716 8.42e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu3g3294 K-box 9.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3294 - - gmx:100783345 357.836