Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3292 ATGGACTTGAAGTCGAATCATACTCCTGTTCTCACTGATACTGCACCCGTAACAAAGTCTAGACTGGGTGTGCATTCAAGTTTGTTGCCTTACTCCCATACTGGGGCAACCTTTACCCATGGAATGTTCTTGACTATCCCAAGGAGGAAGACAGGAATTCTTGAAGATGTTCGTTCTAGTGGTTTTTTGGATGCCATGAAATCATCTTCACCTCCACCCAGGATGATAACAAAGGATGTTAACCATGGTTTTGCATCATCTGATGCTGATGCCGCTGGTTCTTATTTTAGCTGGCTGCTAAAATACCCATCAGCTCTTACATCTTTTGATCAAATCACAAACTATGCAAAAGGGAAAATAATTGCGTTGTTTATGGATTATGATGGTACTCTTTCACCGATTGTGGATAATCCTGACTGCGCTTTCATGTCTGACAATATGCGTGCTGCCGTTAAAAAGGTGGCAGAATATTTTCCAACAGCAATAATTAGTGGAAGAAGTCGTGACAAGGTATATCAATTTGTAGGACTAACAGAACTCTATTACGCTGGTAGTCATGGGATGGACATCATTGGCCCTGTTAGGCAATCTGTATCCGATAATCACCCAAATTGCATTAGGTCTACAGACAAGCAGGGTAAGGAAGTAAATTTATTCCAACCCGCTGCTGAATTTCTGCCAATGATTAATGAAGTATTGCAGTCTCTTCATGAGTGTACGAAAGACATTAAAGGAGCTAGAGTTGAGAACAATAAATTTTGTGTATCTGTGCACTACCGGAATGTAGATGAAAAGaGCTGGGATTTGGTGGGGCAACGTGTTCATGATGTTCTGAAGGGCTATCCGCGTTTGCGCTTAACTCATGGGCGGAAGGTTTTAGAGGTCCGACCTGTGATTAACTGGGATAAGGGAAAAGCTGTCACCTTTTTACTTGAGTCCCTTGGGCTAAACAATTGTGATGATGTGCTTCCTATATATATTGGTGATGATCGGACTGACGAAGATGCATTTAAGGTTTTGAGAGAGGGAAATAAAGGTTATGGGATCTTGGTGTCTTCAGCACCAAAAGAAAGCAACGCAATTTACTCTCTTCGTGATCCATCAGAGGTCATGGAATTTCTCAAGTCACTTGTGTTATGGAAGTCAACCTTAAAAAGCTTTATATAG 1167 0.4139 MDLKSNHTPVLTDTAPVTKSRLGVHSSLLPYSHTGATFTHGMFLTIPRRKTGILEDVRSSGFLDAMKSSSPPPRMITKDVNHGFASSDADAAGSYFSWLLKYPSALTSFDQITNYAKGKIIALFMDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVYQFVGLTELYYAGSHGMDIIGPVRQSVSDNHPNCIRSTDKQGKEVNLFQPAAEFLPMINEVLQSLHECTKDIKGARVENNKFCVSVHYRNVDEKSWDLVGQRVHDVLKGYPRLRLTHGRKVLEVRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDRTDEDAFKVLREGNKGYGILVSSAPKESNAIYSLRDPSEVMEFLKSLVLWKSTLKSFI 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3292 388 Pfam Trehalose-phosphatase 124 368 IPR003337 GO:0003824|GO:0005992
Ssu3g3292 388 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 384 - -
Ssu3g3292 388 Gene3D - 121 212 IPR023214 -
Ssu3g3292 388 Gene3D - 219 386 IPR023214 -
Ssu3g3292 388 TIGRFAM T6PP: trehalose-phosphatase 219 378 IPR003337 GO:0003824|GO:0005992
Ssu3g3292 388 SUPERFAMILY HAD-like 122 381 IPR036412 -
Ssu3g3292 388 CDD HAD_TPP 122 372 - -
Ssu3g3292 388 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 384 IPR044651 GO:0004805|GO:0005992
Ssu3g3292 388 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 123 341 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3292 Ssu-Chr3 89480390 89482743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3292 112 377 Trehalose Biosynthesis Gene Families AT1G06410 23.843 3.32e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3292 K01087 - gmx:100775207 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3292 3 89480390 89482743 Ssu3g3292 3 89480390 89482743 ECH