Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3287 ATGGACGCCGTCGATTCAACCCCAAATCCGCCTCCCCTCCCTCCCTATGATCCATCAGCACGGAACCACGCGCCTTCAGAGTATCACAACCCGTCGCAACACCAATCGGAAACCGGACAAAACGGTACCGAAGACGGAAATCCATCGGAGAACGGCCAGGGCGCCGCCGATAAGAACACTTCGCATCCTCAGATTCCAAAGCCCTTGCTCTCCGAGAACGGATTGACGCGGAGCGGCACCGGCACCGACAAGGATCAATCCGGCGGCGAGGAGGAGACTACGAGCAAGCGGCGCCGCCGGAGCCGGTGGGACCCGCAGCCGGAATCGAACGATCAGAGTGGCAGCGAATCGGGGACCGGACCAAAGAAGAGGAGGTCCCGTTGGGCCGACGACGATCCCAAGCCGGTGATTCAGCTTCCTGATTTCATGGGCGGTATTGAATTCGATCCCGAGATTCAAGCTTTGAACAGTAGGCTTCTTGAGATTAGTCGAATGCTACAGTCAGGTTTGCCCTTAGATGACCGCCCTGAAGGTGCTCGATCTCCTTCACCTGAACCTATATATGATAACATGGGCATTAGAATTAACACTAGGGAATATCGTGCGCGTGAGAGATTGCAAAAAGAGAGGCAGGAAATTATATCTCAGATTATAAAGAAGAACCCTGCGTTCAAGCCACCTGCGGATTATAGGCCGCCCAAGCTTCAGAAGAAGCTTTATATACCGATGAAGGAATACCCCGGTTACAATTTCATTGGGCTTATTATTGGCCCCAGAGGTAACACCCAGAAGCGGATGGAGAAAGAAACCGGTGCTAAAATCGTGATTCGAGGTAAAGGATCGGTGAAAGAGGGCAGGCTGCAGCAGAAGAGGGATTTAAAGCCTGACCCTTCGGAGAACGAAGATTTGCATGTTTTGGTGGAGGCTGAGACGCAGGAGGCGCTTGATGCTGCTGCGGGTATGGTGGAGAAGCTCTTGCAGCCTGTGGATGAGGTATTGAATGAGCATAAGAGGCAACAGCTTAGGGAACTCGCTGCTTTGAATGGGACGATCAGGGATGAGGAGTATTGCAGGTTGTGTGGTGAACCTGGTCATCGTCAATATGCGTGTCCCACTAGGACTTCTACGTTTAAGAGTGAGGTTGTATGTAAACATTGTGGGGATGGTGGTCATCCAAGCATAGATTGTCCGGTGAAGGGTGCAACTGGGAAGAAGATGGATGATGAATATCAGAATTTCCTTGCAGAGTTGGGAGGTTCGGTTCCTGAATCTGCAACGAAGCAAAGCAGTACATTGGCAATTGGCTCAGGCGCTTCTGGAAGCAATCCTCCTTGGGCTAACAATTCTGGTACGGCTGGTGGTACACCTCAAGCTGGCTTAGGGGCTGCAGCagttaaaaaggaaattgatgATACGAATTTGTACATAGGGTATTTGCCACCCACTCTTGATGACGATGGCCTGATCCAATTATTTCAACAATTTGGTGAGATTGTTATGGCGAAAGTTATCAAGGATCGAATGTCGGGTTTAAGCAAAGGATATGGTTTTGTGAAGTATGCTGATGTCACAATGGCAAACAATGCAATCTTGGCCATGAATGGTTACCGTCTTGAGGGTCGAACCATTGCGGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTACCTCCTGGGCCACCAGCATCTGCTGTGCCCACTTATCCTGTTCCAAGCCAGCCACTTGGTGCCTATCCATCCCAACAGTATGCTGCCGGTGGGCCCCTTGGGAGTGCTCCTCCTGTGAGTTACGGTGGTACCCCAGTGCCTTGGGGACCACCTGTTCCTCCTCCATATGCTCCTTATGCTCCTCCTCCACCTGGATCAACTATGTATCCACCTATGCAAGGTCAACCTATGCCTCCTTATGGGGTTCAATATCCTCCTCCTGTGCAGACTGGCCCGCCCGGTGCCCCATCCCAGCCTGCAACTTCCAGTGAAGTGCAGCAGAGTTATCCTCCCGGAGTGCAGGCTGACAATAGTACCTCAATTCAGTCTGTACCAGCCAATGTATATGGTAACTCAGTACCTTCAATGCCACCAGCAGCTCAACCTACATATCCTGCATCTTATGGATATCCGCCTTACTATAATGCAGTTCCTCCACCACCTCCCCCTCCTGCCCCCATTCCTGTCTCAACTTCAGACCAATCCCACAGCATTGCAAATGTGCCTTGGGCAAGTAATCCTCTAGTGCCACCTCCTGCTCCATCGGCAGACAAGACAACATATGGCGCAGATCAATCGCAGAGTGTTGGAAATGTGCCTAGGGCCACAAATCCACCAGGGCCTCCTCCTGCTTCATCAGCTGAGAAGACTTCATATGCTGCTGATTCAGAGTATGAGAAGTTCATGGCAGAGATGAAATGA 2409 0.511 MDAVDSTPNPPPLPPYDPSARNHAPSEYHNPSQHQSETGQNGTEDGNPSENGQGAADKNTSHPQIPKPLLSENGLTRSGTGTDKDQSGGEEETTSKRRRRSRWDPQPESNDQSGSESGTGPKKRRSRWADDDPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQEALDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGSVPESATKQSSTLAIGSGASGSNPPWANNSGTAGGTPQAGLGAAAVKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMSGLSKGYGFVKYADVTMANNAILAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVPSQPLGAYPSQQYAAGGPLGSAPPVSYGGTPVPWGPPVPPPYAPYAPPPPGSTMYPPMQGQPMPPYGVQYPPPVQTGPPGAPSQPATSSEVQQSYPPGVQADNSTSIQSVPANVYGNSVPSMPPAAQPTYPASYGYPPYYNAVPPPPPPPAPIPVSTSDQSHSIANVPWASNPLVPPPAPSADKTTYGADQSQSVGNVPRATNPPGPPPASSAEKTSYAADSEYEKFMAEMK 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3287 802 SMART kh_6 235 327 IPR004087 GO:0003676
Ssu3g3287 802 Pfam Splicing factor 1 helix-hairpin domain 124 231 IPR032570 -
Ssu3g3287 802 SUPERFAMILY RNA-binding domain, RBD 468 560 IPR035979 GO:0003676
Ssu3g3287 802 MobiDBLite consensus disorder prediction 623 675 - -
Ssu3g3287 802 MobiDBLite consensus disorder prediction 706 802 - -
Ssu3g3287 802 Gene3D K Homology domain, type 1 232 354 IPR036612 GO:0003723
Ssu3g3287 802 SMART rrm1_1 473 546 IPR000504 GO:0003723
Ssu3g3287 802 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 235 361 IPR036612 GO:0003723
Ssu3g3287 802 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 474 543 IPR000504 GO:0003723
Ssu3g3287 802 MobiDBLite consensus disorder prediction 118 134 - -
Ssu3g3287 802 MobiDBLite consensus disorder prediction 623 650 - -
Ssu3g3287 802 MobiDBLite consensus disorder prediction 708 725 - -
Ssu3g3287 802 Gene3D - 441 554 IPR012677 -
Ssu3g3287 802 MobiDBLite consensus disorder prediction 755 770 - -
Ssu3g3287 802 Gene3D - 149 227 - -
Ssu3g3287 802 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 472 550 IPR000504 GO:0003723
Ssu3g3287 802 MobiDBLite consensus disorder prediction 169 190 - -
Ssu3g3287 802 ProSiteProfiles Zinc finger CCHC-type profile. 357 371 IPR001878 GO:0003676|GO:0008270
Ssu3g3287 802 MobiDBLite consensus disorder prediction 651 675 - -
Ssu3g3287 802 Gene3D - 355 408 - -
Ssu3g3287 802 SUPERFAMILY Retrovirus zinc finger-like domains 353 399 IPR036875 GO:0003676|GO:0008270
Ssu3g3287 802 MobiDBLite consensus disorder prediction 280 300 - -
Ssu3g3287 802 MobiDBLite consensus disorder prediction 1 139 - -
Ssu3g3287 802 PANTHER RNA-BINDING PROTEIN RELATED 47 760 IPR045071 -
Ssu3g3287 802 PANTHER RNA-BINDING PROTEIN RELATED 746 802 IPR045071 -
Ssu3g3287 802 MobiDBLite consensus disorder prediction 432 453 - -
Ssu3g3287 802 CDD SF1_like-KH 236 352 - -
Ssu3g3287 802 Pfam KH domain 250 320 IPR004088 GO:0003723
Ssu3g3287 802 ProSiteProfiles Type-1 KH domain profile. 250 322 - -
Ssu3g3287 802 MobiDBLite consensus disorder prediction 84 106 - -
Ssu3g3287 802 MobiDBLite consensus disorder prediction 25 83 - -
Ssu3g3287 802 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 47 760 - -
Ssu3g3287 802 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 746 802 - -
Ssu3g3287 802 ProSiteProfiles Zinc finger CCHC-type profile. 383 397 IPR001878 GO:0003676|GO:0008270
Ssu3g3287 802 SMART c2hcfinal6 356 372 IPR001878 GO:0003676|GO:0008270
Ssu3g3287 802 SMART c2hcfinal6 382 398 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3287 Ssu-Chr3 89387401 89389809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3287 472 603 Eukaryotic Initiation Factors Gene Family AT3G16380 30.216 2.16e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3287 K13095 - gmx:100800982 1276.54