Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3282 ATGAaaccttttcttctctttctcacGTTCTCCTTCCTTTGCCAAACACACCTACTACTAGTTTTCTCTGCCACAACCCTGCCCCTCCAACTCATCACCCTGCTCTCAATAAAATCCGCCCTCGTAGACCCTCTCAATAACCTCCATGACTGGGACACCTCCTCCACCCTCTCCAACTCTAATCACCAAGACCCAATATGGTGTTCCTGGAGAGGCATCACATGCCACTCCAAAACAGCACAAATCACCACCCTGGACCTCTCCCACCTCAACCTGTCCGGCACAATCTCACCCCAAATCCGCCACCTATCCACCTTAAACCACTTAAACCTCAGCGGAAACGACTTCAGCGGGAGTTTCCAATCTGCCATTTTCGAACTAGCAGAACTGAGAGCTCTAGACATCAGCCACAACTCCTTAAACTCAACCTTCCCACCTGGCATATCAAAGCTCAAGTTCCTCAGATTCTTCAACGCTTACAGCAACAGCTTCACTGGCCTTCTCCCCCAAGAGTTAACCGGCCTCCGTTTCCTCGAGCAACTCAACCTCGGCGGAAGCTACTTCCGCGACACGATTCCACCAGGTTACGGCACTTTCCCGAGACTCAAGTTTCTAGACTTAGCCGGCAACAGCTTGGTAGGTCCACTCCCACCCCAACTAGGCCACTTAGCGGAACTGGAACGCTTGGAAATCGGATACAACAATTTCTCAGGAACACTACCCCCGGAACTCGCATTGCTCTCTAACCTCAAATACTTAGACATCTCATCCGCTAACATCACAGGGAGCGTGATCCCGGAGCTGGGAAACCTCACCAAGCTGGAGACCCTTCTGCTGTTCAAAAACCGGTTAACAGGGCAAATCCCACCAACCATAGGTAACCTGAAGTCCCTGAAAGGCCTTGACCTGTCAGATAACGAACTCACAGGACCAATCCCGACACAAGTCACAATGCTAAAGGAACTAACCATGCTCAACCTAATGGACAACAGCCTAACCGGAGAAATACCAGAAGGAATAGGAGAGTTACCAAAGCTGGAGACTCTGTTCCTCTTCAACAACTCACTCACCGGAACCCTCCCTCAGCAACTCGGCTCCAACGGGTTACTACAGAGACTCGACGTTTCCACAAACTCACTCGAAGGTCCAATCCCTGCAAGTCTCTGCAAAGGTAACAAGCTGGTGAGACTCATACTCTTCCTCAACAAACTCTCCAATAGGATCCCACCCTCCTTGGCCAACTGCACCTCACTCGTTAGGGTTCGCATCCAAAACAATTTTCTCAACGGTTCAATCCCCATAGGCCTCACGCTCCTCCCTAACCTAACATTCCTCGACATCAGCAACAACAACTTCCACGGTCAAATTCCGGAACAGTTAGGCAACTTGCAGTACTTCAACATCTCCGGAAACTCCTTCGGAACCACCCTACCTTCCGCTATCTGGAATGCAACTAATCTTCAGATCTTCTCCGCGGCTTTCTCAAACATCACTGGTCAAATTCCCGATTTCATAGGGTGTCAGACATTGTACAAGCTCGAATTGCAAGGAAACACAATCAACGGTACGATTCCGTGGGATATTGGACACTGTCAGAAACTCATTGTGCTGAATCTGAGCCGAAACTCACTCACCGGGATCATTCCCTGGGAAATCTCCACTCTCCCTTCCATCACCGACGTTGATCTCTCTCACAATTCCCTCACCGGAACCATACCTTCCAATTTCAACAACTGCTCCACGCTCGAGAACTTCAACGTAAGCTTCAACTCCCTCACCGGTCCGATTCCGTCGTCCGGCATCTTCCCTAACCTACATCCTTCCTCCTACTCCGGCAACCAAGGCCTCTGCGGCGGCGTCTTGGCCAAACCCTGCGCCGCCGACGCGCTCGCCGCGGCGGAAAACCAGGTCGACGTCCGCCGCCAGCAGCCGAAGCGGACCGCCGGTGCAATCGTCTGGATCGTCGCCGCCGCCTTCGCGATCGGCCTCTTTGTGCTCGTCGCCGGGACGCGCTGCTTCCACGCGAACTATAACCATCGGTTCGGCGACGAGGTCGGGCCGTGGAAGTTAACGGCGTTCCAGCGGCTGAACTTCACGGCGGAGGACGTGCTGGAGTGTTTGTCGATGTCCGATAAGATACTGGGAATGGGATCCACGGGAACGGTTTACCGAGCGGAGATGCCAGGTGGCGAGATCATAGCGATTAAGAAGTTATGGGGGAAGCAGAAGGAGAACATCCGACGGAAGAGAGGGGTTCTGGCTGAGGTGGACGTGTTGGGAAACGTGAGGCACAGGAATATCGTGAGGTTGTTAGGGTGCTGCAGCAACAGGGAGTGCACCATGCTGCTTTACGAGTACATGCCTAATGGGAATTTGGATGATTTGTTGCATGGGAAAAATAAAGGCGATAATTTAGTTGCTGATTGGTTCACGAGGTATAAGATCGCCTTGGGCGTGGCTCAGGGAATCTGCTATCTTCACCACGACTGTGACCCCGTCATCGTGCACCGCGATCTCAAACCTAGTAACATATTATTGGACGGTGAGATGGAGGCCAGAGTGGCAGATTTTGGGGTCGCCAAGTTGATTCAGACCGACGAGTCCATGTCTGTCATTGCCGGATCCTATGGCTACATTGCTCCAGAATATGCTTATACGCTGCAGGTGGATGAGAAGAGTGATATTTACAGCTATGGAGTGGTGTTAATGGAGATCCTAAGCGGAAAACGTTCGGTGGATGCAGAATTTGGCGATGGGAACAGCATCGTGGATTGGGTTAGGTCTAAGATAAAGTCTAAAGATGGGATTGATGATATACTGGACAAGAATGCAGGGGCCGGATGCACCTCGGTGAGGGAGGAGATGATACAAATGCTTAGAATTGCATTGCTTTGCACCAGCAGGAACCCAGCGGATAGGCCTTCCATGAGAGATGTTGTGTTGATGCTGCAAGAGGCCAAACCTAAGAGGAAATTGCTTGATAGTGTTGTAGGTCGATGTGCTGGGGACAATGTGGTCGGCGGTGGTGACATTCCTTTGCCACAAAAGCCAACCGTGGATCAATGctaa 3069 0.5119 MKPFLLFLTFSFLCQTHLLLVFSATTLPLQLITLLSIKSALVDPLNNLHDWDTSSTLSNSNHQDPIWCSWRGITCHSKTAQITTLDLSHLNLSGTISPQIRHLSTLNHLNLSGNDFSGSFQSAIFELAELRALDISHNSLNSTFPPGISKLKFLRFFNAYSNSFTGLLPQELTGLRFLEQLNLGGSYFRDTIPPGYGTFPRLKFLDLAGNSLVGPLPPQLGHLAELERLEIGYNNFSGTLPPELALLSNLKYLDISSANITGSVIPELGNLTKLETLLLFKNRLTGQIPPTIGNLKSLKGLDLSDNELTGPIPTQVTMLKELTMLNLMDNSLTGEIPEGIGELPKLETLFLFNNSLTGTLPQQLGSNGLLQRLDVSTNSLEGPIPASLCKGNKLVRLILFLNKLSNRIPPSLANCTSLVRVRIQNNFLNGSIPIGLTLLPNLTFLDISNNNFHGQIPEQLGNLQYFNISGNSFGTTLPSAIWNATNLQIFSAAFSNITGQIPDFIGCQTLYKLELQGNTINGTIPWDIGHCQKLIVLNLSRNSLTGIIPWEISTLPSITDVDLSHNSLTGTIPSNFNNCSTLENFNVSFNSLTGPIPSSGIFPNLHPSSYSGNQGLCGGVLAKPCAADALAAAENQVDVRRQQPKRTAGAIVWIVAAAFAIGLFVLVAGTRCFHANYNHRFGDEVGPWKLTAFQRLNFTAEDVLECLSMSDKILGMGSTGTVYRAEMPGGEIIAIKKLWGKQKENIRRKRGVLAEVDVLGNVRHRNIVRLLGCCSNRECTMLLYEYMPNGNLDDLLHGKNKGDNLVADWFTRYKIALGVAQGICYLHHDCDPVIVHRDLKPSNILLDGEMEARVADFGVAKLIQTDESMSVIAGSYGYIAPEYAYTLQVDEKSDIYSYGVVLMEILSGKRSVDAEFGDGNSIVDWVRSKIKSKDGIDDILDKNAGAGCTSVREEMIQMLRIALLCTSRNPADRPSMRDVVLMLQEAKPKRKLLDSVVGRCAGDNVVGGGDIPLPQKPTVDQC 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3282 1022 SMART serkin_6 708 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3282 1022 Gene3D Ribonuclease Inhibitor 31 319 IPR032675 -
Ssu3g3282 1022 ProSitePatterns Protein kinases ATP-binding region signature. 714 737 IPR017441 GO:0005524
Ssu3g3282 1022 Pfam Protein kinase domain 711 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3282 1022 SUPERFAMILY L domain-like 54 384 - -
Ssu3g3282 1022 SUPERFAMILY Protein kinase-like (PK-like) 711 983 IPR011009 -
Ssu3g3282 1022 ProSiteProfiles Protein kinase domain profile. 708 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3282 1022 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE TDR ISOFORM X3 4 1009 - -
Ssu3g3282 1022 Pfam Leucine rich repeat N-terminal domain 30 75 IPR013210 -
Ssu3g3282 1022 SUPERFAMILY RNI-like 287 596 - -
Ssu3g3282 1022 SMART LRR_typ_2 199 223 IPR003591 -
Ssu3g3282 1022 SMART LRR_typ_2 555 578 IPR003591 -
Ssu3g3282 1022 SMART LRR_typ_2 439 463 IPR003591 -
Ssu3g3282 1022 SMART LRR_typ_2 343 367 IPR003591 -
Ssu3g3282 1022 SMART LRR_typ_2 127 151 IPR003591 -
Ssu3g3282 1022 SMART LRR_typ_2 271 295 IPR003591 -
Ssu3g3282 1022 Gene3D Phosphorylase Kinase; domain 1 689 786 - -
Ssu3g3282 1022 Pfam Leucine rich repeat 509 568 IPR001611 GO:0005515
Ssu3g3282 1022 Pfam Leucine rich repeat 273 332 IPR001611 GO:0005515
Ssu3g3282 1022 Gene3D Transferase(Phosphotransferase) domain 1 787 997 - -
Ssu3g3282 1022 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 1009 - -
Ssu3g3282 1022 ProSitePatterns Serine/Threonine protein kinases active-site signature. 834 846 IPR008271 GO:0004672|GO:0006468
Ssu3g3282 1022 Gene3D Ribonuclease Inhibitor 320 632 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3282 Ssu-Chr3 89317908 89322004 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3282 6 998 Receptor kinase-like Gene Family AT1G08590 43.053 0.0 769
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu3g3282 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3282 - - gmx:100809695 1848.56