Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3281 ATGTACTCATCCAcaagaaaggagagagaaagtatTTGGATTTGCGGGTTTTCTGCAACTATGGAGAAGAACAACAGTAAAGTCTGCAAAATCTGTAATAAGTGCTTCTCCAGTGGAAAAGCCATGGGAGGACACATGAGATCTCACTTTGCCAAATTTCCAATTCCTCCAAAGCCCGAAACCAAGAATCAAGCACCAGACAACTCGACCAAGTTTACCCATCATCCAATTCAATCAGCTTCCTCACTGACTTCTCATCCTCAAAAGAAACCAGCACAGAATTTTCGATCTTTGAAACGCAACTTTTTTGCCTTCTTGGCAAACacaaatagagaaaatgaaTCCAGGTCTCACCCTAAAAATCCAACCCACAAAAGATCCAAATGCCACCGCAAATTTATTGCAGTGGCCAAGATGAAAGCTGAACCAAAACAAGTGAGTTCAAAACCTGATTCTCTTGCAGAAGAAGCTGCTAGGTCTCTATTAATGCTTTCCAAGGATAAATGGCCAGAAAGCAAAGAGATCAAGaagcaaaaaatgaaggaaaccAACAAAATGGAGGCAAAAGACAGAGAAAATGGTAGAGATGACTTTCTTGTTCAAACTCAATCTCAAGCCAAATTCAAGTGTGAGAGGTGCGGGAAAACATTTCAATCTTATCAAGCTCTTGGTGGACACAAAGCAAACcataagaaaaatgagaatatatgCCAAGAAGGTGGTGACTCTAATGATGACGGAAGTGATAAAAATAGTGATGTTGTAGATCAGAAAGTGTTTGAGTGCCGAAACTGCTCCAAAGGATTCAAGTCTGCTCGAGCACTTGGTGGACACAAGAAGGTACACTTCTTCAATACTATGGTTGCTAATGCTCAAACTACGGCTAATCAATTTGGTGGCAAGTTGATAGTAGATCTCAATTTTCCAGCCCCTGGAGGAGATTAA 945 0.3788 MYSSTRKERESIWICGFSATMEKNNSKVCKICNKCFSSGKAMGGHMRSHFAKFPIPPKPETKNQAPDNSTKFTHHPIQSASSLTSHPQKKPAQNFRSLKRNFFAFLANTNRENESRSHPKNPTHKRSKCHRKFIAVAKMKAEPKQVSSKPDSLAEEAARSLLMLSKDKWPESKEIKKQKMKETNKMEAKDRENGRDDFLVQTQSQAKFKCERCGKTFQSYQALGGHKANHKKNENICQEGGDSNDDGSDKNSDVVDQKVFECRNCSKGFKSARALGGHKKVHFFNTMVANAQTTANQFGGKLIVDLNFPAPGGD 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3281 314 MobiDBLite consensus disorder prediction 53 92 - -
Ssu3g3281 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
Ssu3g3281 314 SUPERFAMILY beta-beta-alpha zinc fingers 27 54 IPR036236 -
Ssu3g3281 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 208 235 IPR013087 -
Ssu3g3281 314 MobiDBLite consensus disorder prediction 232 252 - -
Ssu3g3281 314 MobiDBLite consensus disorder prediction 108 129 - -
Ssu3g3281 314 ProSitePatterns Zinc finger C2H2 type domain signature. 262 282 IPR013087 -
Ssu3g3281 314 MobiDBLite consensus disorder prediction 62 92 - -
Ssu3g3281 314 SMART c2h2final6 27 49 IPR013087 -
Ssu3g3281 314 SMART c2h2final6 260 282 IPR013087 -
Ssu3g3281 314 SMART c2h2final6 208 230 IPR013087 -
Ssu3g3281 314 ProSitePatterns Zinc finger C2H2 type domain signature. 210 230 IPR013087 -
Ssu3g3281 314 SUPERFAMILY beta-beta-alpha zinc fingers 208 282 IPR036236 -
Ssu3g3281 314 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 21 312 - -
Ssu3g3281 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 282 IPR013087 -
Ssu3g3281 314 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 21 312 IPR044303 GO:0006355
Ssu3g3281 314 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Ssu3g3281 314 Pfam C2H2-type zinc finger 28 49 - -
Ssu3g3281 314 Pfam C2H2-type zinc finger 259 282 - -
Ssu3g3281 314 Pfam C2H2-type zinc finger 208 232 - -
Ssu3g3281 314 MobiDBLite consensus disorder prediction 174 193 - -
Ssu3g3281 314 Gene3D Classic Zinc Finger 205 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3281 Ssu-Chr3 89301486 89302430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3281 29 311 C2H2 Transcription Factor Family AT3G60580 30.263 5.17e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu3g3281 zf-C2H2_6 4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3281 - - ccaj:109798515 322.783