Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3280 ATGGGGGAATCGAGTACTAGGGTTTCTCCCACTCTTCAGCAGCCCACCGCAGGCATCATCAAGAGACTTCGACTCGAGAACTTCATGTGCCATTCCAAACACGAGACCGACTTCGGAAACCACGTCAATTTCATCACCGGCCAAAATGGAAGTGGTAAGAGTGCAATCCTAACTGCATTGTGTGTTGCATTTGGCTGTCGAGCGAAAGGGACTCAAAGGGCATCCACTTTGAAGGACTTCATTAAAACTGGTGCCAGTAATGCTATCATCCAAgttgaaattcaaaatgagGGAGAGGATGCTTTCAAGCCTGAAATATATGGTGATGTTATCATTGTAGAACGTAGGATATCTGAATCCACAAGTTCTACTACATTAAAAGACCACCAAGGAAAGAAAGTTGTCAGTCGGAAAGCAGATCTTCTAGAAATCATTGAACATTTTAATATTGATGTGGAGAATCCATGTGTAATTATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCTGGgaataagaaagataaatttaagTTCTTTTACAAGGCCACACTTCTTCAGCAAGTCAATGACCTTCTGGAAAGCATTTCCAATGAAATAACTGCTGCACATGGaatagttgaagaattagagacTGCAATAAGGCCCATAGAGAAGGAGCTTAATGAGCTGCAAGTTAAAATTAGAGCTATGGAACATGTTGAACAAATATCCATACAGGTTCAGCAGTTAAAGAAGAAACTTGCATGGTCATGGGTTTATGATGTGGACAAGCAACTAGAGGAGCAAAATATGAAGATTGAAAAGTTGAAGAACCGGATACCTACCTGCCAGGCTAAGATTGATCAACAACTGCATCGGGTTGAAAAGTTGACGGAAACCTGCTCTAAGAAGAGAGATgaaattaaaagtatgttgGAAAAGACATCACAAGTTAAGCAAATGAAGGAAAATTTAAACCAATCTGTGTCCATGGCAAAGAAAGAAGCATTCGAACTTGAGCGAGACTGCAAATGCAAAACTAGCAACATAGAGAAGATGGTACGACAACTTAAAATGCTTGAACAACAAGTACAGGATATTCATGAGCAGCACGTAAAAAACACTCAGGCTGAAGAATCTGACAAGGAGGAGAAACTGAAGGGGCTTAAAGATGAGGTTCATGCTGCTGAGTTAGAGCTGAACAGATTGAAAGAAGAGGAGGCTTCATTGATGAATAGCATACGTaggcaaaatgatgaaatccGAAAGATAGCTGATAAGATTCATGATCATGAAAAAAAGCATAATCATATGATGGGTCAAATCCGTGATCTGCAACAACACCAAAGCAATAAGATTACTGTTTTTGGAGGAGATAGAGTGATAAATCTGTTACGTATAATTGAGAGATACCACCGAAGGTTTAAGATGCCTCCAATTGGTCCAATTGGTGCCCATCTgAAGCTTCTTCATGGTAATAAATGGGCGATTGCCCTTGAATATGCTATTGGGAAATGGCTCAAGTCTTTTATAGTAACTGATCACACGGATTTTCGTCTTCTGAAACAATGTGCGAAGGAAGCAAACTATGGTCaccttcaaattattatttatgatttttcaacCCCAAGGTTGACAATACCACTACACATGCTTCCTGATACAGATCATCCAACAGTTCTTTCTGTCTTACAATGCGAGAATCACACTGTGACTAATGTCTTAGTTGATCTGGGAAATGTTGAAAGACAAGTACTTGTTAATGATTATGAAGCTGGAAAAGTGGTTGCCTTTGAACAAAGGATCCGAAATTTGAAGGAGGTCTATGCAGAAAATGGACTTAAAATGTTTTCTCGAGGTCCAGTGCAGACTGTTCTTCATCCAAATAAGAGGCAAAGAACTGGCCGTCTTTGTGGTTCTTTTGAAGATGAGATTGAGAAACTTCATTCTGAAGCATCTGATGAACAAAAGGCAGCTGATCACTGTAAAAGTATTAAAAGGAAGGCAGAGGTCAAGCTTGAGGAGCTTGACAAGAATATGAATTCTATCAAGAGGCGTTGTGTAAATGCAGGTAAAAGTTTTACTTCTAAGAAGCTAGCGTTGGAGGAAGAAATGCATGTGCAAACTGCTGATAATAGCGCAACACCTTTGTCCTCTGTTGATGAGCTCATTGAAGAAATTTCAgagataaaaaaaaaaatagaagaagagcaAGTCTTGTCGGAAGGCCTTCAGCAAAAGGGGTGTGAAGCAGCAGGAAAAGCAGATGATCTCAAAGTAAAATTTGACAAACTGTGTGAATCAACGAATGGTGAAATTGCTGCCCTAGAGAAAGCTGAGAGTGAACTTGTggatattgaaaaagaaatggatTCAGCaacaaaggcAAAGGGTCATTATGAGGGTGTCATGAAAAGCAAGGTCCTAATTGATATTAAGGAGGCAGAGGAACACTATCTAGAGCTTACAAAGAGGCACAAGGAAAGTGTTGAAAAGGCTTCCATAATTTGCTCCCAGAATGAACTTGATTCATTAGGAGGTTGTGATGGGAATACCCCAGAGCAAATCAGTGCTCAATTAGAAAGACTAAATCAGACACTAAGGCGTGAAAGTGAAAGGTACTCTGAATCAATCAATGATCTTAGGATGCTGTATAAGAAAAAAGAGCGTAAGATTATAAAAAGGCAGCAAGTTTACAGAACCCTTCGACAGAAATTGGATGCTTGCCAGAGAGCCTTAGAGTTACGAAAGAGAAAATTTCAGAGAAATGCTACTTATCTTAAGCACCAGCTTTCTTGGAAATTTAATGGCCATTTGAGAAAGAAGGGGATTAGTGGACTTATCAAAGTTAATTATGAAGAGAAAACCTTAATGATTGAGgTACAAATGCCCCAAGATGCATCAAACAGAGCTGTTCGAGACACTAGGGGCCTTTCAGgTGGGGAGCGCTCTTTTTCAACATTGTGCTTTGCGTTGGCCCTTCATGAAATGACCGAGGCCCCTTTTAGAGCAATGGATGAATTTGATGTCTTTATGGATGCAGTGAGCCGAAAAATCAGCTTGGACACTCTGGTTGATTTTGCTGAGGCACATGGATCACAGTGGATATTCATCACCCCGCATGATACTAGCTCGGTGAGAGCGGGGGACAGGATAAAGAAGATGCAAATGGCCGCTCCACGTTCTTGA 3171 0.3847 MGESSTRVSPTLQQPTAGIIKRLRLENFMCHSKHETDFGNHVNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGASNAIIQVEIQNEGEDAFKPEIYGDVIIVERRISESTSSTTLKDHQGKKVVSRKADLLEIIEHFNIDVENPCVIMSQDKSREFLHSGNKKDKFKFFYKATLLQQVNDLLESISNEITAAHGIVEELETAIRPIEKELNELQVKIRAMEHVEQISIQVQQLKKKLAWSWVYDVDKQLEEQNMKIEKLKNRIPTCQAKIDQQLHRVEKLTETCSKKRDEIKSMLEKTSQVKQMKENLNQSVSMAKKEAFELERDCKCKTSNIEKMVRQLKMLEQQVQDIHEQHVKNTQAEESDKEEKLKGLKDEVHAAELELNRLKEEEASLMNSIRRQNDEIRKIADKIHDHEKKHNHMMGQIRDLQQHQSNKITVFGGDRVINLLRIIERYHRRFKMPPIGPIGAHLKLLHGNKWAIALEYAIGKWLKSFIVTDHTDFRLLKQCAKEANYGHLQIIIYDFSTPRLTIPLHMLPDTDHPTVLSVLQCENHTVTNVLVDLGNVERQVLVNDYEAGKVVAFEQRIRNLKEVYAENGLKMFSRGPVQTVLHPNKRQRTGRLCGSFEDEIEKLHSEASDEQKAADHCKSIKRKAEVKLEELDKNMNSIKRRCVNAGKSFTSKKLALEEEMHVQTADNSATPLSSVDELIEEISEIKKKIEEEQVLSEGLQQKGCEAAGKADDLKVKFDKLCESTNGEIAALEKAESELVDIEKEMDSATKAKGHYEGVMKSKVLIDIKEAEEHYLELTKRHKESVEKASIICSQNELDSLGGCDGNTPEQISAQLERLNQTLRRESERYSESINDLRMLYKKKERKIIKRQQVYRTLRQKLDACQRALELRKRKFQRNATYLKHQLSWKFNGHLRKKGISGLIKVNYEEKTLMIEVQMPQDASNRAVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAEAHGSQWIFITPHDTSSVRAGDRIKKMQMAAPRS 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3280 1056 Pfam RecF/RecN/SMC N terminal domain 20 1051 IPR003395 -
Ssu3g3280 1056 Coils Coil 316 364 - -
Ssu3g3280 1056 SUPERFAMILY Smc hinge domain 426 595 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Ssu3g3280 1056 Coils Coil 207 227 - -
Ssu3g3280 1056 Coils Coil 660 680 - -
Ssu3g3280 1056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 1046 IPR027417 -
Ssu3g3280 1056 Coils Coil 366 428 - -
Ssu3g3280 1056 Coils Coil 253 308 - -
Ssu3g3280 1056 Gene3D - 19 224 IPR027417 -
Ssu3g3280 1056 Coils Coil 851 878 - -
Ssu3g3280 1056 Coils Coil 711 741 - -
Ssu3g3280 1056 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 12 1056 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Ssu3g3280 1056 Coils Coil 806 826 - -
Ssu3g3280 1056 Coils Coil 770 790 - -
Ssu3g3280 1056 CDD ABC_SMC6_euk 20 172 - -
Ssu3g3280 1056 Gene3D - 774 1055 IPR027417 -
Ssu3g3280 1056 CDD ABC_SMC6_euk 960 1056 - -
Ssu3g3280 1056 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 12 1056 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3280 Ssu-Chr3 89243307 89288184 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3280 13 1056 Structural Maintenance of Chromosomes family AT5G07660 57.950 0.0 1195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3280 K22804 - gmx:100816916 1763.04