Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3275 ATGataaaaatcttcaaaaaacaaataagcaGCCAGCAGCAGCAGGGGAAGCAGCCAGTTTCTGAACATAACAATCCAATGAATAACTATACATGTTATTATGCCTGCCTTGCAATTCCAGCTATGTTGGTGGTTTTGCTGGCACTTTGTGTTTGTGAAGGCACTTCAGGGCTAACACAAGCTGAGGCCCTTCTCAGGTGGAAACAAAGTCTCCCTGACCAACCCATTTTCGACTCATGGGTGATCAACTCCACTGCCAGCCCATGTTCATGGCGAGGTATCACTTGTGATTCTCAAGGCAGTGTGACCATAATAAACTTGGCTTACACTGGACTTGCAGGTACCCTTCGAAACCTGAACTTGTCCGTTTTCTCTAACCTTCTTCGTCTTGATCTCAAAGAAAACAATCTCACTGGCCCCATACTACAAAACATTGGGGTGCTCTCAAAGCTCCAATTCCTTGACCTTTCCACCAATCATCATCTCAATGGCACTCTGCCTCTTTCTATTGCCAATCTGACTCAAGTTTATGAGCTTGATGTTTCAAGAAGTAATATAACAGGGATATTAGACCCTCGGTTATTTCCTGATGGATCTGACCGTCCCAAAAGTGGCCTCATTGGTATCAGGAATCTCCTCTTCCAAGACACCCAGCTAGGTGGCAGAATTCCAAATGAAATAGGGAACATAAGAAACTTGACTCTGCTAGCTCTAGATGGCAACAACTTCTATGGGCCTATTCCTCCCTCACTAGGCAACTGCACACATTTAAGCATTCTTAGAATGCCTCAAAACCAACTCACAGGCCCAATACCCCCAAGTATTGGTAAACTAAAGAATCTAACCGATGTGCGCTTTTACATTAACAACTTAAATGGTACGGTGCCCCAAGAATTTGGAAACTTGTCATCCTTGATTGTGCTGCATCTTGCTGAGAACAACTTCAGTGGTGAATTACCACCACAAGTGTGCAAAAGTGGCACACTTGTAAATTTCAGTGCAGCCCACAATAGTTTCACTGGTCCAATTCCAATAAGCCTTAGAAACTGCCCATCCTTGTACAGAGTTCGACTTGAATACAACCGGCTGACAGGTTATGCAGATCAGGATTTTGGAGGGTATCCTAACCTCAATCACATGGACTTCAGCTATAACAGGGTGCAAGGTAACCTCTCTGCAAATTGGGGTGCCTGCAAAAACTTGCAATCACTCAACATGGCTGGGAATGCAATAAGTGGCAACATTCCAGGAGAGATTTTTCAGTTGGATCAACTGCAAGAGCTTGACCTATCCTCCAACCAAATATCAGGAGATATTCCACCACAGATAGGAAATTCTTCAAAGTTGTATAAACTAAATTTGTGGGACAACAAACTGTCCGGTATGATACCAGCAGAAATTGGAAAGCTTTCCAATTTGCAGTCCTTAGACCTGTCTATGAACATGCTATTGGGACCAATCCCAAATGAGATAGGGGACATCTCCAACTTGCAGAATTTAAATCTGAGCAACAATGACTTTAATGGCACAATCCCCTACCAAATTGGAAACCTTGCAgctttacaatattttttggaCTTGAGTTACAATTCACTTTCAGGAGAAATTCCTGCTGATCTTGGGAGGCTTTCAAATTTGATAAGCTTGAATATCTCTCACAACAATCTGTCAGGTTCTATCCCTCACTCCCTTGGTGATATGTTGAGTTTGTCAGCCATCAACCTCTCCTACAATAATTTGGAGGGTCCAGTTCCTGAAACTGGCATATTCAACTCTTCGTATCCCCTCGATTTGAGCAACAACAAAGATTTATGTGGGCACATTCGGGGCTTGCAAGCTTGTAATGTCTCTCTCACTAAACCTGATGGTGGATCGAGTAAAAAAAACAAGGTTGTGATCCCTATTGTTGCTTCCTTGGGAGgtgttcttcttctttctttggtgTTGGTTGGGATTTTGTTCTCTAGCTATAAGAGAAAATCAAGAGCTCCAAGACAAAGAAATTCATTCAGAAGACCGAATCCATTTTCAATTTGGTACTTCAATGGCAGAGTTGTGTATAGAGACATAATCGAAGCTACCAGCAACTTTGACAACCAGTATTGCATTGGGGAAGGAGCACTGGGAAAAGTTTATAAAGCGGAGATGCAAGGAGGTCAAGTATATGCTGTAAAAAGGTTGAAGTGTGATTCAGACAACTTAGACATGGAGAGTATAAAAACCTTTCAGAGCGAAGTAGAAGCCTTGACAGAAACACGCCACCGAAACATTGTCAAGCTTTACGGATTTTGCTGTGAAGGGATgcacacatttttaatttatgagtatATGGATAAGGGGAACTTAGCTGAGATGCTGAGAGATGACAAGGATGCACTGGGAAAAGTTTATAAAGCGGAGATGCAAGGAGGTCAAGTATATGCTGTAAAAAGGTTGAAGTGTGATTCAGACAACTTAGACATGGAGAGTATAAAAACCTTTCAGAGCGAAGTAGAAGCCTTGACAGAAACACGCCACCGAAACATTGTCAAGCTTTACGGATTTTGCTGTGAAGGGATgcacacatttttaatttatgagtatATGGATAAGGGGAACTTAGCTGAGATGCTGAGAGATGACAAGGATGCATTAGAACTGGATTGGCACAAGAGGGTTGATATTATCAAAGGTGTAGCAAGCGCTTTGTCCTATATGCATCATGATTGTGCTCCACCATTAATTCACAGAGACATATCAAGCAAGAACATTTTACTGTCCTCCAATCTTGAAGCTCGTGTCTCAGATTTTGGAACTGCAAGGTTTCTGAAACCTGACTCGCCTATTTGGACATCATTTGCAGGCACATACGGCTATGCTGCTCCAGAGCTTGCTTACACAATGGCAGTGACTGAGAAATGTGATGTGTTCAGCTTTGGCGTTTGGCTTTGGAGGTTCTTACGGGAAAGCACCCCGGTGACCTTGTTTCCTCCATACAAACTACTAGTGAAGAAAAAGTAA 3000 0.4127 MIKIFKKQISSQQQQGKQPVSEHNNPMNNYTCYYACLAIPAMLVVLLALCVCEGTSGLTQAEALLRWKQSLPDQPIFDSWVINSTASPCSWRGITCDSQGSVTIINLAYTGLAGTLRNLNLSVFSNLLRLDLKENNLTGPILQNIGVLSKLQFLDLSTNHHLNGTLPLSIANLTQVYELDVSRSNITGILDPRLFPDGSDRPKSGLIGIRNLLFQDTQLGGRIPNEIGNIRNLTLLALDGNNFYGPIPPSLGNCTHLSILRMPQNQLTGPIPPSIGKLKNLTDVRFYINNLNGTVPQEFGNLSSLIVLHLAENNFSGELPPQVCKSGTLVNFSAAHNSFTGPIPISLRNCPSLYRVRLEYNRLTGYADQDFGGYPNLNHMDFSYNRVQGNLSANWGACKNLQSLNMAGNAISGNIPGEIFQLDQLQELDLSSNQISGDIPPQIGNSSKLYKLNLWDNKLSGMIPAEIGKLSNLQSLDLSMNMLLGPIPNEIGDISNLQNLNLSNNDFNGTIPYQIGNLAALQYFLDLSYNSLSGEIPADLGRLSNLISLNISHNNLSGSIPHSLGDMLSLSAINLSYNNLEGPVPETGIFNSSYPLDLSNNKDLCGHIRGLQACNVSLTKPDGGSSKKNKVVIPIVASLGGVLLLSLVLVGILFSSYKRKSRAPRQRNSFRRPNPFSIWYFNGRVVYRDIIEATSNFDNQYCIGEGALGKVYKAEMQGGQVYAVKRLKCDSDNLDMESIKTFQSEVEALTETRHRNIVKLYGFCCEGMHTFLIYEYMDKGNLAEMLRDDKDALGKVYKAEMQGGQVYAVKRLKCDSDNLDMESIKTFQSEVEALTETRHRNIVKLYGFCCEGMHTFLIYEYMDKGNLAEMLRDDKDALELDWHKRVDIIKGVASALSYMHHDCAPPLIHRDISSKNILLSSNLEARVSDFGTARFLKPDSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVWLWRFLRESTPVTLFPPYKLLVKKK 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3275 999 PRINTS Leucine-rich repeat signature 470 483 - -
Ssu3g3275 999 PRINTS Leucine-rich repeat signature 425 438 - -
Ssu3g3275 999 SUPERFAMILY L domain-like 85 415 - -
Ssu3g3275 999 ProSiteProfiles Leucine-rich repeat profile. 424 446 IPR001611 GO:0005515
Ssu3g3275 999 Gene3D Phosphorylase Kinase; domain 1 661 776 - -
Ssu3g3275 999 SMART LRR_typ_2 543 567 IPR003591 -
Ssu3g3275 999 SMART LRR_typ_2 302 326 IPR003591 -
Ssu3g3275 999 SMART LRR_typ_2 422 446 IPR003591 -
Ssu3g3275 999 SMART LRR_typ_2 470 494 IPR003591 -
Ssu3g3275 999 SUPERFAMILY Protein kinase-like (PK-like) 793 995 IPR011009 -
Ssu3g3275 999 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 33 793 - -
Ssu3g3275 999 Pfam Leucine rich repeat 351 411 IPR001611 GO:0005515
Ssu3g3275 999 Pfam Leucine rich repeat 448 507 IPR001611 GO:0005515
Ssu3g3275 999 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 792 985 - -
Ssu3g3275 999 ProSitePatterns Tyrosine protein kinases specific active-site signature. 907 919 IPR008266 GO:0004672|GO:0006468
Ssu3g3275 999 Gene3D Ribonuclease Inhibitor 58 198 IPR032675 -
Ssu3g3275 999 Pfam Leucine rich repeat N-terminal domain 59 97 IPR013210 -
Ssu3g3275 999 Gene3D Phosphorylase Kinase; domain 1 790 862 - -
Ssu3g3275 999 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 33 793 - -
Ssu3g3275 999 SUPERFAMILY Protein kinase-like (PK-like) 665 790 IPR011009 -
Ssu3g3275 999 SMART serkin_6 697 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3275 999 Pfam Protein kinase domain 702 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3275 999 Pfam Protein kinase domain 793 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3275 999 Gene3D Ribonuclease Inhibitor 199 287 IPR032675 -
Ssu3g3275 999 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 792 985 - -
Ssu3g3275 999 Gene3D Ribonuclease Inhibitor 289 617 IPR032675 -
Ssu3g3275 999 ProSiteProfiles Protein kinase domain profile. 697 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3275 999 Gene3D Transferase(Phosphotransferase) domain 1 863 996 - -
Ssu3g3275 999 SUPERFAMILY RNI-like 337 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3275 Ssu-Chr3 89183992 89187135 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3275 794 955 Receptor kinase-like Gene Family AT4G08850 54.878 7.51e-52 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu3g3275 Pkinase 2.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3275 - - aprc:113866080 1228.77