Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3274 ATGGCAACGACCAAGAAATGTGATGTGTTCAGCTTTGGCGTTTTGTCTTTGGAGGTTCTTACGGGGAAGCACCCCGGTGAACTTGTTTCTTCCATACAAACTTGTAGTGAGCAAAGAGTAAACCTCAAGTTGATTTTAGACCCTCGTCTCTGGCCTCCTGCCGAGAACCGTATTTTGAAGGAAGTGGATTTGATTGCCAAGATAGCTCTTTcatgtttaaaatcaaatccTCAATCTCGACCAACAATGCGAAGCATAGCTCAGCTGCTTGTGCTGGATTTAtggaagaaaagagaataa 300 0.3967 MATTKKCDVFSFGVLSLEVLTGKHPGELVSSIQTCSEQRVNLKLILDPRLWPPAENRILKEVDLIAKIALSCLKSNPQSRPTMRSIAQLLVLDLWKKRE 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3274 99 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 96 - -
Ssu3g3274 99 Pfam Protein tyrosine and serine/threonine kinase 3 90 IPR001245 GO:0004672|GO:0006468
Ssu3g3274 99 Gene3D Transferase(Phosphotransferase) domain 1 1 97 - -
Ssu3g3274 99 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 96 - -
Ssu3g3274 99 SUPERFAMILY Protein kinase-like (PK-like) 3 90 IPR011009 -
Ssu3g3274 99 ProSiteProfiles Protein kinase domain profile. 1 92 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3274 Ssu-Chr3 89166892 89167191 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3274 4 90 Receptor kinase-like Gene Family AT2G01210 37.895 1.40e-14 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu3g3274 PK_Tyr_Ser-Thr 6.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3274 - - gmx:100813275 154.451