Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3273 ATGTCGGACGGAGAAAAACGCGGGAAATGCTTTAAGAAGACTATGTTGGTGGTTTTGCTGGCACTTTGTGTTTGTGAAGGCACTTCAGGGCTAACACAAGCTGAGGCCCTTCTCAGGCACCCATCGAACCTGAACTTGTCCGTTTTCTCTAACCTTCTTCGTCTTGATCTCAAAGAAAACAATCTCACTGGCCCCATACCACAAAACATTGGGGTGCTCTCAAAGCTCCAATTCCTTGACCTTTCCACCAATCATCATCTCAATGGCACTCTGCCTCTTTCTATTGCCAATCTGACTCAAGTTTATGAGCTTGATGTTTCAAGAAGTAATATAACAGGGATATTAGACCCTCGGTTATTTCCTGATGGATCTGACCGCCCCAAAAGTGGCCTCATTGGTATCAGGAATCTCCTCTTCCAAGACACCCAGCTAGGTGGCAGAATTCCAAATGAAATAGGGAACATAAGAAACTTGACTCTGCTAGCTCTAGATGGAAACAACTTCTATGGAGGAGTTGTGTATAGAGCCATAATCGAAGCTACCAACAACTTTGACGACCAGTATTGCATTGGGGAAGGAGCACTGGCAAAAGTTTATAGAGCAGAGATGCAAGGAGGTCAAGTATATGCTGTAAAAAAGTTGAAGTGTGACGCAGACAACTTAGACGTTGAGAGTATAAATAGCTTTCAAAGTGAGATAGAAGCCACGACAGAAACACGCCACCGAAACATTGTCAAACTATACGGATTTTGCTCTCAAGGGATGCacccatttttaatttatgagtatATGGATAAAGGGAACTTAGCTGACGTGCTGAGAGATGACAAGGTAGCATTAGAACTGGATTGGCACAAGAGGGTTGATATTATCAAAGGTGTAGCAAGCGCTTTGTCCTATATGCATCATGATTGTGCTACACCATTAATTCACAGAGACATATCAAGCAAGAACGTTTTGCTGTCCTCCAATCTTGACGCTCATGTCTCAGGGTTTCTGAAGCCTGAACCCCAGGGGCGGACCTACACTTAA 1032 0.4322 MSDGEKRGKCFKKTMLVVLLALCVCEGTSGLTQAEALLRHPSNLNLSVFSNLLRLDLKENNLTGPIPQNIGVLSKLQFLDLSTNHHLNGTLPLSIANLTQVYELDVSRSNITGILDPRLFPDGSDRPKSGLIGIRNLLFQDTQLGGRIPNEIGNIRNLTLLALDGNNFYGGVVYRAIIEATNNFDDQYCIGEGALAKVYRAEMQGGQVYAVKKLKCDADNLDVESINSFQSEIEATTETRHRNIVKLYGFCSQGMHPFLIYEYMDKGNLADVLRDDKVALELDWHKRVDIIKGVASALSYMHHDCATPLIHRDISSKNVLLSSNLDAHVSGFLKPEPQGRTYT 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3273 343 SUPERFAMILY L domain-like 44 170 - -
Ssu3g3273 343 Gene3D Ribonuclease Inhibitor 37 172 IPR032675 -
Ssu3g3273 343 SMART serkin_6 184 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3273 343 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 42 171 - -
Ssu3g3273 343 ProSitePatterns Tyrosine protein kinases specific active-site signature. 309 321 IPR008266 GO:0004672|GO:0006468
Ssu3g3273 343 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 168 332 - -
Ssu3g3273 343 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 42 171 - -
Ssu3g3273 343 Gene3D Phosphorylase Kinase; domain 1 173 263 - -
Ssu3g3273 343 ProSiteProfiles Protein kinase domain profile. 184 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3273 343 Pfam Protein tyrosine and serine/threonine kinase 190 332 IPR001245 GO:0004672|GO:0006468
Ssu3g3273 343 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 168 332 - -
Ssu3g3273 343 SUPERFAMILY Protein kinase-like (PK-like) 171 332 IPR011009 -
Ssu3g3273 343 Gene3D Transferase(Phosphotransferase) domain 1 264 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3273 Ssu-Chr3 89164475 89166318 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3273 24 336 Receptor kinase-like Gene Family AT4G08850 35.775 7.90e-48 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu3g3273 PK_Tyr_Ser-Thr 3.7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3273 - - aprc:113866080 300.827