Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3272 ATGAGCAACCATACATGTCATGCCTTCCTTGCAATCCCAGCTACGTTGGTGGTTTTGCTTGCTCTTTGTCAAGGCACTTCTGGGCTAACACAAGCTGAGGCCCTTCTCAGGTGGAAACAGAGTCTCCCTGTCCAACCCATTTTGGACTCATGGGTGATCAACTCCACTGTCAGCCCATGTTCATGGCGAGGTATCACTTGTGATTCTCAAGGCAGGGTGACCATAATAAACTTGGCTTACACTGGACTTGCAGGTACCTTTCAAAACTTGAACTTGTCTGTTTTCACTAACCTTCTTCGTCTTGatctcaaagtaaacaaccTCACTGGCCCCATACCACAAAACTTTGGGCTGCTCTCAAAGCTCCAATTCCTTGACCTTTCCACCAACTATCTCAATGGCACTCTGCCTCTTTCCATTGCCAATCTGACTCAAGTTTCTGAGCTTGATGTTTCAAGAAATGATGTAACAGGGATATTAGACCCTCGGTTATTTCCTGATGGATCTGACCGCCCCAAAAGTGGCCTCATTGGTATCAGGAATCTCCTCTTCCAGGACACCTTGCTAGGTGGTAGAATCCCAAATGAAATAGGGAACATAAGAAACTTGACTCTGTTAGCTCTAGATGGAAACAACTTCTATGGGCCTATTCCTCCCTCACTAGGCAACTGCACACATTTAAGCATTCTTAGAATGCCTCAAAACCAACTCACAGGCCCAATACCCGCAAGTATTGGTaaattaaccaatctaaccgatGTGCGCTTTTTCACTAACAACTTAAATGGTACGGTGCCCCAAGAATTTGGAAACCTGTCTTCCTTGATTGTGCTGCATCTTGCTGAGAACAACTTCGTTGGTGAATTACCACCCCAAGTGTGCAAAAGTGGCACACTTGTAAATTTCAGTGCAGCCTACAATAGTTTCAGTGGCCCAATTCCAATAAGCCTTAGAAACTGCCCAGCCTTGTACAGAGTTCGACTTGAATACAACCGGTTGTCAGGTTATGCAGATCAGGATTTTGGAGTGTATCCTAACCTCACTTACATGGATTTCAGCTACAACAGGGTGCAAGGTGACCTCTCTACAAGTTGGGGTGCCTGCAAAAACTTGCAATTTCTCAACATGGCTGGGAATGCAGTTAATGGCAACGTTCCAGCTGAGATTTTTCAGTTGGACCAACTACAAGAGCTTGACCTATCCTCCAACCAAATATCAGGAGAGATTCCTCCACAGATAGGAAACTCCTCCAAGTTGTATGAATTGAATTTGAGTGACAACAAACTCACTGGTATGGTACCACCAGAAATTGGAAAGCTTTCCAATTTGCAGTCCTTAGACCTCTCTATGAACATGCTGTTGGGACCAATCCCCAGTCAGATAGGGGACATCTCCAACTTGCTGAATTTAAATCTAAGCAACAATGAATTTAATGGCACAATCCCCTATCAAATTGGAAACCTTGCATCTTTACAAGAGTTTTTGGACTTGAGTTACAATTCACTTTCAGGAGAAATTCCTTCTGATCTTGGGAAGCTTTCAAATTTGATAAGCTTGAATATCTCTCACAACAATCTGTCTGGTTCTATCCCTGCCTCCCTTAGTAAAATGTTTAGTTTGTCAGCCATCAACCTCTCCTACAACAATTTGGAGGGTCCAGTTCCTGAAGGTGGCATATTCAACTCTTCTCATCCCCTGGATTTGagcaacaataaaaatttatgtggGAATATTCGAGATTTGCAACCTTGTGATGTCTCTCTCACTAAACCTGATGGTGGATCAAGTAACAAAAAGAAGGTTGTGATCCCAATTGTTGCTTCCTTGGGAGGtgctctttttatttctttggggTGTGTTGGGATTGTTTTCTTTTGCTGTAAGAGAAAGTCAAGAGCTCGAAGACAAAAAAGTTCACCCAAAAGACCAAATCCATTTTCAATTTGGTACTTTAATGGCAGAGTTGTGTATGGAGACATAATCGAAGCTACCAAGAACTTTGACAACCAGTATTGCATTGGGGAAGGAGCATTGGGAAAAGTTTATAAAGCGGATATGAAAGAAGGTCAAGTATTTGCTGTAAAAAAGTTGAAGTGTGATGCAGACAACTTAGACGTTGAGAGCATAAAAACCTTTCAGAATGAGGTAGAAGCCATGACAGAAACACGCCACCGAAACATTGTGAAGCTTTACGGATTTTGCTGTGAAGGGATgcacacatttttaatttatgagtatATGGATAGAGGGAACTTAGCCGACATGCTGAGAGATGAAAAGGACGCATTAGAACTAGATTGGCCTAAGAGGGTTGATATTATCAAAGGTGTAGCAAGCGCTTTGTCCTATATGCATCATGATTGTGCTCCACCTTTAATTCACAGAGACATATCAAGCAAGAACATTTTACTGTCCTCCAATCTTGAAGCTCATGTCTCAGATTTTGGAACTGCAAGGTTTCTGAAGCCTGACTCCCCTATTTGGACATCATTTGCCGGCACATATGGCTATGCTGCTCCAGAGCTTGCTTACACAATGGCAGTGACTGAGAAATGTGATGTGTTCAGCTTTGGCGTTTTGGCTTTGGAGGTTCTGACTGGAAAGCACCCCGGTGACCTTGTTTCCTCCATACAAACTTCTAGTGAGCAGAAAATAAACTTCAAAGAGATTTTAGACCCTCGCCTCTCGCCTCCTGCTAAGAACCATATTTTGAAGGAATTGGCATTGATTGCCGACCTAGCTCTTTCATGTTTACAAACAAACCCTCAATCTCGACCAACTATGCGAAGCATAGCTCAGCTGCTTGAAATGGAGACTGCAGATATGAGAAAACTCACGATTtag 2844 0.4156 MSNHTCHAFLAIPATLVVLLALCQGTSGLTQAEALLRWKQSLPVQPILDSWVINSTVSPCSWRGITCDSQGRVTIINLAYTGLAGTFQNLNLSVFTNLLRLDLKVNNLTGPIPQNFGLLSKLQFLDLSTNYLNGTLPLSIANLTQVSELDVSRNDVTGILDPRLFPDGSDRPKSGLIGIRNLLFQDTLLGGRIPNEIGNIRNLTLLALDGNNFYGPIPPSLGNCTHLSILRMPQNQLTGPIPASIGKLTNLTDVRFFTNNLNGTVPQEFGNLSSLIVLHLAENNFVGELPPQVCKSGTLVNFSAAYNSFSGPIPISLRNCPALYRVRLEYNRLSGYADQDFGVYPNLTYMDFSYNRVQGDLSTSWGACKNLQFLNMAGNAVNGNVPAEIFQLDQLQELDLSSNQISGEIPPQIGNSSKLYELNLSDNKLTGMVPPEIGKLSNLQSLDLSMNMLLGPIPSQIGDISNLLNLNLSNNEFNGTIPYQIGNLASLQEFLDLSYNSLSGEIPSDLGKLSNLISLNISHNNLSGSIPASLSKMFSLSAINLSYNNLEGPVPEGGIFNSSHPLDLSNNKNLCGNIRDLQPCDVSLTKPDGGSSNKKKVVIPIVASLGGALFISLGCVGIVFFCCKRKSRARRQKSSPKRPNPFSIWYFNGRVVYGDIIEATKNFDNQYCIGEGALGKVYKADMKEGQVFAVKKLKCDADNLDVESIKTFQNEVEAMTETRHRNIVKLYGFCCEGMHTFLIYEYMDRGNLADMLRDEKDALELDWPKRVDIIKGVASALSYMHHDCAPPLIHRDISSKNILLSSNLEAHVSDFGTARFLKPDSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLALEVLTGKHPGDLVSSIQTSSEQKINFKEILDPRLSPPAKNHILKELALIADLALSCLQTNPQSRPTMRSIAQLLEMETADMRKLTI 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3272 947 Gene3D Transferase(Phosphotransferase) domain 1 747 945 - -
Ssu3g3272 947 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 939 - -
Ssu3g3272 947 Gene3D Ribonuclease Inhibitor 26 108 IPR032675 -
Ssu3g3272 947 Pfam Leucine Rich Repeat 515 536 IPR001611 GO:0005515
Ssu3g3272 947 SMART serkin_6 667 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3272 947 ProSiteProfiles Protein kinase domain profile. 667 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3272 947 PRINTS Leucine-rich repeat signature 440 453 - -
Ssu3g3272 947 PRINTS Leucine-rich repeat signature 395 408 - -
Ssu3g3272 947 SUPERFAMILY L domain-like 344 576 - -
Ssu3g3272 947 Pfam Protein kinase domain 672 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3272 947 CDD STKc_IRAK 673 936 - -
Ssu3g3272 947 Gene3D Phosphorylase Kinase; domain 1 628 746 - -
Ssu3g3272 947 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Ssu3g3272 947 Gene3D Ribonuclease Inhibitor 172 260 IPR032675 -
Ssu3g3272 947 ProSitePatterns Tyrosine protein kinases specific active-site signature. 792 804 IPR008266 GO:0004672|GO:0006468
Ssu3g3272 947 ProSiteProfiles Leucine-rich repeat profile. 394 416 IPR001611 GO:0005515
Ssu3g3272 947 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 2 939 - -
Ssu3g3272 947 Gene3D Ribonuclease Inhibitor 109 167 IPR032675 -
Ssu3g3272 947 SMART LRR_typ_2 488 512 IPR003591 -
Ssu3g3272 947 SMART LRR_typ_2 392 416 IPR003591 -
Ssu3g3272 947 SMART LRR_typ_2 143 167 IPR003591 -
Ssu3g3272 947 SMART LRR_typ_2 119 142 IPR003591 -
Ssu3g3272 947 SMART LRR_typ_2 440 464 IPR003591 -
Ssu3g3272 947 SMART LRR_typ_2 513 537 IPR003591 -
Ssu3g3272 947 SMART LRR_typ_2 272 296 IPR003591 -
Ssu3g3272 947 SUPERFAMILY L domain-like 56 407 - -
Ssu3g3272 947 Pfam Leucine rich repeat 394 453 IPR001611 GO:0005515
Ssu3g3272 947 Gene3D Ribonuclease Inhibitor 261 587 IPR032675 -
Ssu3g3272 947 SUPERFAMILY Protein kinase-like (PK-like) 640 937 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3272 Ssu-Chr3 89153391 89156378 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3272 17 840 Receptor kinase-like Gene Family AT4G08850 38.913 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu3g3272 Pkinase 4.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3272 - - gmx:100814345 1597.41