Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3268 ATGGAAGCAGCTGTGGTGGACGTTGGCTCTAAGCTCCTCAAAGCGGGTTTTGCAATTCCTGACCAGACTCCCGCCATGATAATTCCCACTCAGATGAAACAACTGCTCGATGATGGATCAGTCACTGATAATTCACTGGCTGATAATGTTACCGTTGATCCCGTCGTGCGAGGATTTATTAGAGATTGGGATGCCATTGAGGATTTGTTGCACCATGTTTTATATACCGGCCTCGGATGGGAAATTGGCAATGAAGGTCAAATACTATTTACAGATCCACTTTGTACCCCAAAGGCAAACAAAGAACAGTTGGTGCAACTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCCTCAGAACAAGCAGTGTTATCACTGTATGCTGTGGGACGAATCTCAGGGTGCACTGTTGATATTGGACATGGAAAAATAGATATTGCACCGGTAATTGAGGGTGCTGTTCAACACATTGCCTCAAGAAGATTTGAGTTTGGAGGTATTGATCTAACTAATTTCCTGGCTCAAGAACTTGGCAAGTCCAATCCACAAGTAAGTATCAGCATGTCTGATgtggagaaaataaaagagcaaTACTCATGCTGTGCTGAAGATGAATTAGCTTTTCAGAAGACCCAATATTCTTGTCCTGTGGAGAAGCACACCCTTCCTGATGGACAGGTGATAACAATTGGGAGAGAAAGATATACTGTTGGGGAAGCTTTATTCCAGCCATGTCTATTGGGTTTAGAGGCTCATGGCATTGTTGATCAGCTTGTCCGTGCTGTTTCAACTGTGTCATCTGATAATCAACGGCAGCTGCTGGAAAATACTGTGGTTTGTGGTGGCACTTCTTCCATGACcgGTTTTGAAGAGAGATTTCAGAAGGAATCTAGCTTAAGTTCGTCTGCTGTTCAACCTACCCTGGTTAAGCCTCCAGAATACATGCCAGAAAATTTAACCATGTATTCTGCATGGGTGGGAGGTGCCATACTTGCCAAAGTGGTTTTCCCTCAAAATCAGCACATAACTAAGGCGGACTATGATGAAACTGGACCTTCCATTGTTCACCGGAAATGCTTCTGA 1086 0.4263 MEAAVVDVGSKLLKAGFAIPDQTPAMIIPTQMKQLLDDGSVTDNSLADNVTVDPVVRGFIRDWDAIEDLLHHVLYTGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEFGGIDLTNFLAQELGKSNPQVSISMSDVEKIKEQYSCCAEDELAFQKTQYSCPVEKHTLPDGQVITIGRERYTVGEALFQPCLLGLEAHGIVDQLVRAVSTVSSDNQRQLLENTVVCGGTSSMTGFEERFQKESSLSSSAVQPTLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHITKADYDETGPSIVHRKCF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3268 361 PRINTS Actin signature 100 113 IPR004000 -
Ssu3g3268 361 PRINTS Actin signature 217 233 IPR004000 -
Ssu3g3268 361 PRINTS Actin signature 45 67 IPR004000 -
Ssu3g3268 361 PRINTS Actin signature 125 144 IPR004000 -
Ssu3g3268 361 PANTHER BNACNNG31150D PROTEIN 1 360 - -
Ssu3g3268 361 CDD NBD_sugar-kinase_HSP70_actin 4 168 - -
Ssu3g3268 361 PANTHER ACTIN 1 360 IPR004000 -
Ssu3g3268 361 SMART actin_3 1 361 IPR004000 -
Ssu3g3268 361 Gene3D Actin; Chain A, domain 4 165 252 - -
Ssu3g3268 361 SUPERFAMILY Actin-like ATPase domain 131 361 IPR043129 -
Ssu3g3268 361 Gene3D - 5 355 - -
Ssu3g3268 361 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
Ssu3g3268 361 Gene3D - 123 324 - -
Ssu3g3268 361 Pfam Actin 2 361 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3268 Ssu-Chr3 89060724 89066193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3268 5 361 Cytoskeleton Gene Families AT3G12110 37.333 2.23e-71 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3268 K16615 - gmx:100813266 710.294