Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3261 ATGGCAATAGCGATAACCCAGTGTTCAGAAAAACTAGGCTACCTGATACTTCAATTAGGCAAAAATTTCCTTGTGTTCATGGCCATGGTGATTGCGTGCAATGGTGTACATTTCCTAATAAAGCCTTATGCACAACCTCGCACTACGTCTGACATAATTGTAGGACTAATTATGGGGAACATACCTTTTTTACGTAAACTATATGAAGAATTCAACAGTGCGTTTGGATTTATCATTGATTTTGGCATGATGTGTTACATGTTTGCTTTGGGTATAGAGATGGATCCTTACGTACTGTTCAAAAGGCCAACAAAGGGTGCTCAAGTTGCGTATGCAGGAATAGTGTGCACCTTCATCATGTCGTGTGGCTTGAGCCCACTTCTCCCTTACTTCACACACCAACATGGGGTAGCATTCACCCTCTCCCTCTCTGCACTTCTCTCTAGCACAGCGTCTCCGGTTCTGACCCGGCTAATAACCAACCTCAAAATAGGGAAATCAGATATTGGGAAGCTTGTCATAGCGGCAGGGATGCATTCAGATTTCGTGTGCTCGTTGCTTCTTTCAATTGGGTACATTTTCATGCCATCGGATGCATATTGCATTGGTCCTAACGTGGAGAAGAATGTGAAGAATATAGTGACAATGAGCATTGCAGTTGTTGCACAGACACTGTTCACGGCGGTGGTTTCGCCGGTTTTTATGGCATGGGTTAACAATGAAAACCCCGAAGGGAAACCCATGAAAGGTTCACACCTGGTACTGTCAATTGCCTTCATGGTCATGATTTGTGCCTCCTCAACTCTATACGACTATAGTCCGGTTCTAAGTGCGTTTGTGACAGGGATATGTTTTCCCAGGGAGGGCAGAGTTTCCAAATGGGTTATCAGCAAAATCAACTATCTATTGACCACCATCTTCTTTCCCATCTTCTTCTTGTGGATGGGCTACGCTGCTGATTTAACCAAGTTCCAGCCTGAAGACCATTCAACGTGGGTGAGATTGTTTATACCCGTCGTCATAGTGGTCACAGGTAAGGTTGGTGGCGCACTTGTTTCTGGGGCACTGCTTCGCTTTCACTGGCCAGAATCAGTTGCAATCGGATTGCTCCTCGTCACCAAGGGCCATTTTCATATCTACATGGCTGTCAAATTGAATTGTGGCTCCCCTCCTTCCTCCGGCATTCTGTCggtaattacaatatttttcacAGTGGTGCATGCCCCCATAGTTGTGGCACATATCATCAAACGTGCCAGGAAGAGGGCACCTACTCACAGCATGGCCCTCCAATTGCTGGACCCATCAAGTGAGCTAAGGATACTCTTGTGCCTCCACGGAACTGAGAATGTTCCTGCTTCCATCAACTTCGTCGAGATCTCAAGAGGGACAGCAGACCCTGGCATTCTGCTATATGTGGcagaaattattgaattaactGATCGAATAGCAGCAACAGTAGAGACTGGTGAAGGAGCACATACAACAACTGTGAGAGACAAGGCAGTGGTAGAGATGAGAGAACAAGTATCGAGGTCGTTTCAAGCCTACGTTGATAATGATGGCGATGGTATTACGCTCAAAAGAACATTGGCACTGTCAACAATCAATAACATGGCACAGAACATCTGCGTTTTAGCAGAGGACTTGATGATTGCCCTCGTTATACTTCCATTCCACAGGAACCAGCTTCAGGATGGAAAATTGGATGGTGGCAATCAAGGCTTCAGATATGTGAACCGAAAGTTATTGAAGAGTGCTCCTTGTTCCGTGGGGATTCTAGTGAATAGAGGTTTTGGGTCGATTGAGAAAATGTCAAGGTCTGAGGTATCACTCAAAGTGGCAGCAATATTCATTGGTGGAAAAGATGATAGAGAAGTACTTGCCTATGTGGGCCGTGTAGCATGGCATCCGGGAGTAAAAGTGACAGTAATAAGATTCCTGGTAGACACCAGTGCAGAATCCTCAAGACTGGCGGCTTATAGGGTCAGCCTTCCAGAGCAGGAGGAGGAGTTGGGGATGGATGATGAATGCTTTGCACAGTTCTATGAAAAACATATAGTTGGAGGTCGCATTTCCTATACGGAGAAGCATCTTGCAAATGCGGGCGAGACCTTCTCTACTCTCAGATCATTTGAAGGACAATACTCACTGGTCATTGTAGGAAGAGAAGGTGGAGTAAACTCTATATTGACAAAGGGAATGAATGACTGGCAACAATGCCCAGAACTGGGACCTATAGGGGATGTTCTTTCAGGACCAGACTTCTCAACGTCAGTCTCTGTGTTAATAATCcaacaacacaaacaaaaaggAGAACTAGATGGACTTGACGAGGACTTCTCTATAATGTAG 2355 0.4446 MAIAITQCSEKLGYLILQLGKNFLVFMAMVIACNGVHFLIKPYAQPRTTSDIIVGLIMGNIPFLRKLYEEFNSAFGFIIDFGMMCYMFALGIEMDPYVLFKRPTKGAQVAYAGIVCTFIMSCGLSPLLPYFTHQHGVAFTLSLSALLSSTASPVLTRLITNLKIGKSDIGKLVIAAGMHSDFVCSLLLSIGYIFMPSDAYCIGPNVEKNVKNIVTMSIAVVAQTLFTAVVSPVFMAWVNNENPEGKPMKGSHLVLSIAFMVMICASSTLYDYSPVLSAFVTGICFPREGRVSKWVISKINYLLTTIFFPIFFLWMGYAADLTKFQPEDHSTWVRLFIPVVIVVTGKVGGALVSGALLRFHWPESVAIGLLLVTKGHFHIYMAVKLNCGSPPSSGILSVITIFFTVVHAPIVVAHIIKRARKRAPTHSMALQLLDPSSELRILLCLHGTENVPASINFVEISRGTADPGILLYVAEIIELTDRIAATVETGEGAHTTTVRDKAVVEMREQVSRSFQAYVDNDGDGITLKRTLALSTINNMAQNICVLAEDLMIALVILPFHRNQLQDGKLDGGNQGFRYVNRKLLKSAPCSVGILVNRGFGSIEKMSRSEVSLKVAAIFIGGKDDREVLAYVGRVAWHPGVKVTVIRFLVDTSAESSRLAAYRVSLPEQEEELGMDDECFAQFYEKHIVGGRISYTEKHLANAGETFSTLRSFEGQYSLVIVGREGGVNSILTKGMNDWQQCPELGPIGDVLSGPDFSTSVSVLIIQQHKQKGELDGLDEDFSIM 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3261 784 Pfam Sodium/hydrogen exchanger family 27 415 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Ssu3g3261 784 Gene3D - 21 425 IPR038770 -
Ssu3g3261 784 PANTHER CATION/H + ANTIPORTER 4 782 - -
Ssu3g3261 784 PANTHER CATION/H+ EXCHANGER 3 4 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3261 Ssu-Chr3 88980826 88983930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3261 24 784 Antiporter Super Family AT3G52080 49.486 0.0 776
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3261 - - gmx:100815945 1313.52