Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3259 ATGGAGGAAGTTCAAGTGTCTCAAACCCAACCATCGCTCGGTcaagaagatgaaaatgaagtgaTTACTGAAAGTTCAGCATTTGTTAAAGGGGAACCGGCACCAGAATTTAGTAGTAACCCCCCAAAAGTTGATTCTGAAGTTGAGGCCCTTCACGACAAGGTCACCAAACAAATCATTAAGGAAGGCCATGGCCAGAAACCTTCCAAATATTCAACTTGCTTCTTTCATTACATGGCGTGGTCAGAGAAAACACAGCACAAGTTTGAAGACACATGGCAGGAGCAACGACCAATTGAGATGGTCTTAGGAAAAGagaagaaagaaatgactGGGTTGGGCATTGGTGTGGCAAGCATGAAAGCTGGGGAGCGTGCATTGCTGCGTGTGGGCTGGGAATTAGGATATGGAGAGGAAGGAAGCTTTTCTTTTCCAAATGTTCCACCCATGGCAGATTTAGTTTATGAAGTTGAGCTCATAGGCtttgatgaaacaaaagaaGGGAAAGCTCGCAGTGATATGACTGTGGAGGAAAGGATTAGTGCAGCAGACCGGAGAAAGATGGATGGAAATGCTTTGTATCAGGAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATGGCCATAGCGTATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAGTATAGAGATATGGCTTTGGCTGTAAAGAATCCATGCCATCTTAACATGGCAGCCTGTTTGATTAAGCTGAACCGCTACGAAGAAGCTATAGGACAATGCAGCATTGTACTGGGCGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAGGCTAGAGCAGCACTTGGGCAAACAGATGCTGCCAGGGAAGATTTTCTAAAAGCACGTAAATATGCCCCTGAAGATAAAGCAATTGCAAGAGAATTGAGGTTGCTTGCTGAACATGACAAGGCTGTTTACCAAAAGCAGAAAGAGATATATAAAGGAATATTTGGACCAAGGCCTGAACCAGTACCTAAGGGAAGAAATTGGCTCATACTTATTTGGCAGTGGTTGCTTTCAGTATTCTATCGCCTTGTCACGCTCTTCAAGCGTGAAAGGCATAAATCTGACTAA 1113 0.4214 MEEVQVSQTQPSLGQEDENEVITESSAFVKGEPAPEFSSNPPKVDSEVEALHDKVTKQIIKEGHGQKPSKYSTCFFHYMAWSEKTQHKFEDTWQEQRPIEMVLGKEKKEMTGLGIGVASMKAGERALLRVGWELGYGEEGSFSFPNVPPMADLVYEVELIGFDETKEGKARSDMTVEERISAADRRKMDGNALYQEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLNRYEEAIGQCSIVLGEDENNVKALFRRGKARAALGQTDAAREDFLKARKYAPEDKAIARELRLLAEHDKAVYQKQKEIYKGIFGPRPEPVPKGRNWLILIWQWLLSVFYRLVTLFKRERHKSD 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3259 370 ProSiteProfiles TPR repeat profile. 268 301 IPR019734 GO:0005515
Ssu3g3259 370 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 34 331 - -
Ssu3g3259 370 SUPERFAMILY TPR-like 174 325 IPR011990 GO:0005515
Ssu3g3259 370 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP42-RELATED 34 331 - -
Ssu3g3259 370 Gene3D - 39 164 IPR046357 GO:0003755
Ssu3g3259 370 Gene3D Tetratricopeptide repeat domain 165 296 IPR011990 GO:0005515
Ssu3g3259 370 SUPERFAMILY FKBP-like 47 162 - -
Ssu3g3259 370 MobiDBLite consensus disorder prediction 1 21 - -
Ssu3g3259 370 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 71 163 IPR001179 GO:0003755
Ssu3g3259 370 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 67 160 IPR001179 GO:0003755
Ssu3g3259 370 SMART tpr_5 268 301 IPR019734 GO:0005515
Ssu3g3259 370 SMART tpr_5 234 267 IPR019734 GO:0005515
Ssu3g3259 370 SMART tpr_5 183 216 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3259 Ssu-Chr3 88959848 88963010 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3259 48 336 Calmodulin-binding Proteins AT5G48570 32.432 7.73e-31 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3259 - - gmx:100790587 713.761