Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3256 ATGAAGAGATTGAGGTCGAGCGAGGATCTCCACTCTTACGGCGGAGACAAGAACAATGGTTGCAAGGATTCGAATCTGAACCGTTCCTTTTCGTCCGCGCAGAGAAGCTTCTACTACAAGGCGGAGAATGCGCGGAAGGGGTTGgtgtcgtcgtcgtcgtcgtcgagGTACGAGAGGGATCGGACGGCGGAGGAGGATCGGGAGGGTTCGCGGCTGGTTCGGAAGCGATCGGAGCACGATTTCGAGGGGTTCGACCGGAGGAAGGGGTTCGATCGGTACAGGGAGAGCGAGAGGGGTTTGATTCACCGGTCGGAGAGTTTCTGCGGCGGGTCGCGGAGGGATCAGTTTCCAAAGGGGTTTCGGTCGGAGAGGGAGCGGTCGAGGAGGGAGGGGAGCGTGTCGTCGTGGCGGAGAGGGTTGAAGGATttggaggagagagagagagagagggtggTTCGTTCCCCTAAGGGTTTGAGGGACGTGAAGTCCCCCTCGTGGTCTAAGGATTCTATTTCTGAGAGTGACCAATCCAAGAAGAGATCTTCTTCGCCCAGACCCTTCAGAGACGTTAACTCCAAGGCTAAGTCTAAGTCTCCCACTTGGTCTAAGGATTCGGAGAGCGAGCAGTCTAAGAGTGTTGAGGTGAAGAAGACTGAGGAGGAGGTGCAGGTTGAGAGCGGGAGTAGTAGCGAGATGGAAGAAGGGGAGCTTGAACCTGAACCCCAAACGCAACCTGCCAGTGTTACTTTGGAGACTGATGAGAAGCAAGTTCACAACGAGAATGAATGCCTCCCTAATGATGACAATCATACTGCTGTGGATGAGACGCAGGAGTTTCCCTGTAAGGAAGAAGTGAAACCTAATGAGGAGGTAAAGGACGGAGAGAAAGAAGCTGCTGATGAGGTGCCGGTTGTTCGGGATGATCCGACTGAGAAAATGCTTCTTACGGAGACTAGtggtgatgatgataataaaaaagaggaGTGTTTGGATGCTGGTCCTGAGTGCAAGGAGGAAACAAAGAAGGGTGCGGACGTGGAGAAGGAGAAGGTGTTGTTGAATGAAGGGGAGAATAAGCAGGACAAGGGTGTAGGTGTAGATGGAGATCTAGGAACCGGCATGGATGTTGTCAAACCTGAGTTAAATGATGAAGTGTCAACAGAAAGTCAAGTTCCCAAGGAAGTGGATAGAGAAATGATGATGGAGAGTGCGGTGAACAATGCGAAGGATAAAGGCAAAGCTGTCTCTGTTGCACTTGCACCTCCTGATGTTGCTCATTCTTCAGATGATGGCTTGCGGATTGATAGAGGGTCAAGAGACCTCCCAACGTGTTCTGTTGATGTTATGGAAGGTCCGAGCACAAGGGGATTCGAGTTGTTTTCCAGATCTCCTGTTAGAAAAGTGGAGAAGGTAGACCACTCAGTTCTCAACAAGCACAAGGATGACATGGAGCAGCTTGATCTTACTCTTAGCTTGCCGAATGTTCTGTTACCTATTGGTGCTCATGAGACAACATCGCAAGCCCCTGGATCCCCCAGTCAAGCACGGAGTGTGCAGTCTTTGAGTAATACATTTTGTACTAACTCAGATGGTTTTACTGCATCAATGTCTTTTTCAGGTTCCCAATCAGTCTATCACAATCCAAGCTGTTCTCTGACAAAAAATTCAGTGGATTATGAACAATCTGTTGGCAGTCGCCCCTTATTCCAGGGAATAGATCAAGTTTCCCAGGGATGTTGGCAAGGTCAGTCTCAGACTGATCCCAAACAGAAAGAAGTTCCCTTTGGTCAAAGAACCTCGGTGAACGGAAATGGCACCCTTTACCAGTCTCAGGCATCTTGGGGTGTTTTAGACGGTCAAGCTGTGAAGGGTCAACATTCCAGGGTTCTGGAAGGGAGTTCAAAAATGGGCAGTGGACTTGACAAGCAATTGAGTTTTCATAAGCAGTTTTCAGGACAGTCAAGACGCCATGATGATGTTAGATCTCCTTCACAGAGTGTTGGGTCTCATGATATTGGATCAAATTATAGCTTCGAGAAAAAGAGGGAGGTTAGAGACAGGAGTAGTGGTAGTCTGTATCGAACTACCAGCCAGAAGGAACAAGAACAACTTCTGATGGGCGGAGTTGATTTTGTTGAGACAATCATTGCAAGAATAGTTTCTGAACCTGTTCATGCAATGTCCAGAAAGTTTCATGAAATGACAGGACAGTCCATAGTACGTCTGAAAGAGGGTATTCGTGAAATCATGCTCAATGCAGATAAGCACGGGCAGATACTTGCTTTTCAGAAAGTTTTGCAGAACAGGTCTGATATAATCTTGGATGTCCTACTGAAGTGCCACCGAGTGCAACTGGAAATTTTGGTTGCTTTAAAAACTGGTTTAGCTCATTTTCTTCAGCTAGACAGCAGCATTTCGTCTTCTGAGTTGGCTCAAATTTTTCTGAACTTAAGGTGTAAGAATCTTTCATGTCGAAGTCAGTTGCCTGTGGATGAATGTGATTGCAAGGTTTGTGCGCAGAAGAGTGGTTTTTGCAGGGAATGTATGTGCCTTGTGTGTTCTAAGTTTGACAATGCTTCAAATACATGTAGTTGGGTTGGATGTGATGTTTGCCTTCACTGGTGCCATACTGATTGTGGATTACGGGAATCTTATATTAGAAATGGGCATGGGACAAAAGGGATGACTGAGATGCAGTTTCACTGTATTGCTTGTGATCATCCTTCTGAGATGTTTGGCTTTGTCAAGGAGgtgtttcaaaattttgcaaaagaatGGTCAGTTGAAGCCCTTTGCAAAGAGCTTGAAtatgtaaaaagaattttttcagCCAGCAAGGATATGAGAGGGAGACAGCTGCATGAGATAGCAGAGCAAATGCTGCCAAGGTTGGCAATTAAGTCTAATCTTCCTGAAGTTTTGAGGCACATCATGTCTTTTCTTTCGGACGGTGATTCTTCCAAATTACCCATGACAACAAACTTTTCTGGGAAGGAACAAATTAAAGGAAACAATGGAGTAGCTGGGCCCTAG 3033 0.452 MKRLRSSEDLHSYGGDKNNGCKDSNLNRSFSSAQRSFYYKAENARKGLVSSSSSSRYERDRTAEEDREGSRLVRKRSEHDFEGFDRRKGFDRYRESERGLIHRSESFCGGSRRDQFPKGFRSERERSRREGSVSSWRRGLKDLEERERERVVRSPKGLRDVKSPSWSKDSISESDQSKKRSSSPRPFRDVNSKAKSKSPTWSKDSESEQSKSVEVKKTEEEVQVESGSSSEMEEGELEPEPQTQPASVTLETDEKQVHNENECLPNDDNHTAVDETQEFPCKEEVKPNEEVKDGEKEAADEVPVVRDDPTEKMLLTETSGDDDNKKEECLDAGPECKEETKKGADVEKEKVLLNEGENKQDKGVGVDGDLGTGMDVVKPELNDEVSTESQVPKEVDREMMMESAVNNAKDKGKAVSVALAPPDVAHSSDDGLRIDRGSRDLPTCSVDVMEGPSTRGFELFSRSPVRKVEKVDHSVLNKHKDDMEQLDLTLSLPNVLLPIGAHETTSQAPGSPSQARSVQSLSNTFCTNSDGFTASMSFSGSQSVYHNPSCSLTKNSVDYEQSVGSRPLFQGIDQVSQGCWQGQSQTDPKQKEVPFGQRTSVNGNGTLYQSQASWGVLDGQAVKGQHSRVLEGSSKMGSGLDKQLSFHKQFSGQSRRHDDVRSPSQSVGSHDIGSNYSFEKKREVRDRSSGSLYRTTSQKEQEQLLMGGVDFVETIIARIVSEPVHAMSRKFHEMTGQSIVRLKEGIREIMLNADKHGQILAFQKVLQNRSDIILDVLLKCHRVQLEILVALKTGLAHFLQLDSSISSSELAQIFLNLRCKNLSCRSQLPVDECDCKVCAQKSGFCRECMCLVCSKFDNASNTCSWVGCDVCLHWCHTDCGLRESYIRNGHGTKGMTEMQFHCIACDHPSEMFGFVKEVFQNFAKEWSVEALCKELEYVKRIFSASKDMRGRQLHEIAEQMLPRLAIKSNLPEVLRHIMSFLSDGDSSKLPMTTNFSGKEQIKGNNGVAGP 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3256 1010 Pfam PHD - plant homeodomain finger protein 819 939 IPR032881 -
Ssu3g3256 1010 PANTHER PROTEIN OBERON 4 1 1009 - -
Ssu3g3256 1010 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1009 IPR004082 -
Ssu3g3256 1010 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 730 752 IPR004082 -
Ssu3g3256 1010 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 810 831 IPR004082 -
Ssu3g3256 1010 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 856 876 IPR004082 -
Ssu3g3256 1010 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 769 784 IPR004082 -
Ssu3g3256 1010 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 784 799 IPR004082 -
Ssu3g3256 1010 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 926 945 IPR004082 -
Ssu3g3256 1010 MobiDBLite consensus disorder prediction 1 16 - -
Ssu3g3256 1010 MobiDBLite consensus disorder prediction 44 78 - -
Ssu3g3256 1010 MobiDBLite consensus disorder prediction 104 396 - -
Ssu3g3256 1010 MobiDBLite consensus disorder prediction 116 157 - -
Ssu3g3256 1010 MobiDBLite consensus disorder prediction 253 364 - -
Ssu3g3256 1010 MobiDBLite consensus disorder prediction 172 192 - -
Ssu3g3256 1010 MobiDBLite consensus disorder prediction 57 78 - -
Ssu3g3256 1010 MobiDBLite consensus disorder prediction 675 689 - -
Ssu3g3256 1010 MobiDBLite consensus disorder prediction 1 27 - -
Ssu3g3256 1010 MobiDBLite consensus disorder prediction 648 697 - -
Ssu3g3256 1010 CDD PHD_OBE1_like 849 905 - -
Ssu3g3256 1010 MobiDBLite consensus disorder prediction 199 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3256 Ssu-Chr3 88941573 88945547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3256 819 964 PHD Gene Family AT5G57380 27.397 5.78e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3256 - - gmx:100817003 1627.45