Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3251 ATGAAAGTCGTAAACCATCGTGCTTACGGTGCCGCTGACAAAGGTGCGTGTTTCAATTTGATTGCTTCTTCTCCTCTCCAGAAAATCGTATCAATTGATCTGCTGAAACGTGATCTAATTTGCATACGCTCTACCATGGACATTGATAATGATTTCACATTTTGTCAGGTAACTGCACCTGTTGATCTTGAAACAAACAAGCTTGCTTCAGATATTGCTGATATTTCCATAGAAGAAGAATCTTCAAATGCAACTAGCACTAGTCGGGATAGTGGTTTTTTGTGGAAGGATGGTTTAACAAAAGATTCCAACTCTAAGAAGGAGGCCACAGTTGGTTCTTTGTCTTTTACTGTATCTAACACAGGTTCAAGTCAGCCAAGTGAATCCACCGCGAAATTAGTACCAAGCGAGGCTAACAATTTGCCTCTCAAGTTGCCGGAACAGAGGAATTCTGCTAAGAAGCCGACGGTTCGGGCCAAAGTTCCTTTTGAAAAAGGCTATAGTCAAATGGACTGGCTCAAGCTTACGCGAACACATCCTGACCTTGCAGGTTTGAAAGGGCAGTCAAACAGGAGACTTATTTCTATGGATGAAGTCAGAAAACACCAGACAGAGGGCCAAGTGTGGACTGTATTAAAAGGCCGTGTTTACAATATATCTCCATATATGAAGTTTCACCCCGGAGgtgttgatatgttgatgaAGGCAGTGGGAAAAGATTGCACATCTCTATTCAATAAATACCATGCTTGGGTTAATGCTGAATTCTTGTTGGACAAATGCTTTGTGGGTACCTTAGATGAAGGTCAGTGA 813 0.4108 MKVVNHRAYGAADKGACFNLIASSPLQKIVSIDLLKRDLICIRSTMDIDNDFTFCQVTAPVDLETNKLASDIADISIEEESSNATSTSRDSGFLWKDGLTKDSNSKKEATVGSLSFTVSNTGSSQPSESTAKLVPSEANNLPLKLPEQRNSAKKPTVRAKVPFEKGYSQMDWLKLTRTHPDLAGLKGQSNRRLISMDEVRKHQTEGQVWTVLKGRVYNISPYMKFHPGGVDMLMKAVGKDCTSLFNKYHAWVNAEFLLDKCFVGTLDEGQ 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3251 270 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 191 267 IPR001199 -
Ssu3g3251 270 SMART Cyt_b5_2 194 267 IPR001199 -
Ssu3g3251 270 PANTHER CYTOCHROME B5 DOMAIN-CONTAINING PROTEIN RLF 61 261 - -
Ssu3g3251 270 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 222 229 IPR018506 GO:0020037
Ssu3g3251 270 Gene3D - 188 269 IPR036400 -
Ssu3g3251 270 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 191 269 IPR036400 -
Ssu3g3251 270 MobiDBLite consensus disorder prediction 116 136 - -
Ssu3g3251 270 PANTHER FERREDOXIN 61 261 - -
Ssu3g3251 270 MobiDBLite consensus disorder prediction 116 140 - -
Ssu3g3251 270 Pfam Cytochrome b5-like Heme/Steroid binding domain 196 266 IPR001199 -
Ssu3g3251 270 PRINTS Cytochrome B5 signature 254 266 IPR001199 -
Ssu3g3251 270 PRINTS Cytochrome B5 signature 226 240 IPR001199 -
Ssu3g3251 270 PRINTS Cytochrome B5 signature 216 226 IPR001199 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3251 Ssu-Chr3 88886318 88889715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3251 189 267 NADPH P450 reductases AT5G53560 36.709 6.93e-16 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3251 - - ccaj:109814642 407.527