LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu3g3251	ATGAAAGTCGTAAACCATCGTGCTTACGGTGCCGCTGACAAAGGTGCGTGTTTCAATTTGATTGCTTCTTCTCCTCTCCAGAAAATCGTATCAATTGATCTGCTGAAACGTGATCTAATTTGCATACGCTCTACCATGGACATTGATAATGATTTCACATTTTGTCAGGTAACTGCACCTGTTGATCTTGAAACAAACAAGCTTGCTTCAGATATTGCTGATATTTCCATAGAAGAAGAATCTTCAAATGCAACTAGCACTAGTCGGGATAGTGGTTTTTTGTGGAAGGATGGTTTAACAAAAGATTCCAACTCTAAGAAGGAGGCCACAGTTGGTTCTTTGTCTTTTACTGTATCTAACACAGGTTCAAGTCAGCCAAGTGAATCCACCGCGAAATTAGTACCAAGCGAGGCTAACAATTTGCCTCTCAAGTTGCCGGAACAGAGGAATTCTGCTAAGAAGCCGACGGTTCGGGCCAAAGTTCCTTTTGAAAAAGGCTATAGTCAAATGGACTGGCTCAAGCTTACGCGAACACATCCTGACCTTGCAGGTTTGAAAGGGCAGTCAAACAGGAGACTTATTTCTATGGATGAAGTCAGAAAACACCAGACAGAGGGCCAAGTGTGGACTGTATTAAAAGGCCGTGTTTACAATATATCTCCATATATGAAGTTTCACCCCGGAGgtgttgatatgttgatgaAGGCAGTGGGAAAAGATTGCACATCTCTATTCAATAAATACCATGCTTGGGTTAATGCTGAATTCTTGTTGGACAAATGCTTTGTGGGTACCTTAGATGAAGGTCAGTGA	813	0.4108	MKVVNHRAYGAADKGACFNLIASSPLQKIVSIDLLKRDLICIRSTMDIDNDFTFCQVTAPVDLETNKLASDIADISIEEESSNATSTSRDSGFLWKDGLTKDSNSKKEATVGSLSFTVSNTGSSQPSESTAKLVPSEANNLPLKLPEQRNSAKKPTVRAKVPFEKGYSQMDWLKLTRTHPDLAGLKGQSNRRLISMDEVRKHQTEGQVWTVLKGRVYNISPYMKFHPGGVDMLMKAVGKDCTSLFNKYHAWVNAEFLLDKCFVGTLDEGQ	270

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu3g3251	270	ProSiteProfiles	Cytochrome b5 family, heme-binding domain profile.	191	267	IPR001199	-
	Ssu3g3251	270	SMART	Cyt_b5_2	194	267	IPR001199	-
	Ssu3g3251	270	PANTHER	CYTOCHROME B5 DOMAIN-CONTAINING PROTEIN RLF	61	261	-	-
	Ssu3g3251	270	ProSitePatterns	Cytochrome b5 family, heme-binding domain signature.	222	229	IPR018506	GO:0020037
	Ssu3g3251	270	Gene3D	-	188	269	IPR036400	-
	Ssu3g3251	270	SUPERFAMILY	Cytochrome b5-like heme/steroid binding domain	191	269	IPR036400	-
	Ssu3g3251	270	MobiDBLite	consensus disorder prediction	116	136	-	-
	Ssu3g3251	270	PANTHER	FERREDOXIN	61	261	-	-
	Ssu3g3251	270	MobiDBLite	consensus disorder prediction	116	140	-	-
	Ssu3g3251	270	Pfam	Cytochrome b5-like Heme/Steroid binding domain	196	266	IPR001199	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu3g3251	Ssu-Chr3	88886318	88889715	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu3g3251	189	267	NADPH P450 reductases	AT5G53560	36.709	6.93e-16	70.9

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu3g3251	-		-	ccaj:109814642	407.527

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