Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3236 ATGGGGTACCTCTACCTTTCGTGCAGAGCCGAATCCGCGGTCTCAACCTCGAACTCTTCCAAACCAACGAAAGACAAAGAGAAAGGCATCAAGATCCAAGAGTTTCAGTACAGCGACCTCGAAGCCGCCACCAATGGCTTCTCGGACCGCAAGCTCCTCGGCAAAGGAAGCCACGGCTACGTGTACAAAGCCGTCGTTCGCGGCCGTCCGGTCGCGGTGAAGCGCCCGTCGCGTCCTAACGCCGTTGTTCCCCGACCCGTCTCTTCCTCCGCGCCGGAGATCGTCACCAGCGAGGTCGACAACGAGATCGACATCTTGTCCAAAATCCAGAGCCCGAGGTTGGTGAATTTGGTCGGGTTCACCAACGATTCGAGAGACAGGCTTCTGGTGGTGGAGTTCATGAGCAATGGCACACTCTACGATGTTCTTCATTCCTCCCCGAGGCCTCCCAATTGGGGTAGGAGGATTCGTTTGGCTTTGCAAACTGCAAAGGCCATTGACACCCTTCACTCTTCAACCCCTCCTGTGATTCACCGTGACATTAAATCCGCTAACGTTCTCATCGACCGAAGCTACAATGCCAGGTTAGGTGATTTTGGTTTGGCATTGAGGGGTCATGTTGATGATTACAGACTCAGGTCCACTCCCCCTGCTGGCACCATGGGTTATCTCGATCCTTGTTATGTCACCCCTGACAATCTCAGCACCAAGACtgatgtttttagttttggGATTTTGTTGTTGGAGATTATAAGTGGAAGGAAGGCTATTGATATCACTTATTCACCACCTTCTATTGTGGATTGGGCCATTCCTCTTATCAAGAAAGGGAAATTGCTGGCTGTTTATGATCCCAGGATAGCGCCTCCCAAGGATCCGCTTGTGAGGAAGCACTTGGCTGTGATTGCGGCCAAGTGCGTGAGGTCTTGCAGGGAGAGGAGGCCCTCCATGAAGGAGGTTGTGACTTGGCTTTGTGGCTTGTGCAAGTTGGTGCCTCTTCATTCGTGGAATGGTTTTAACAACCCTTGCATGATGGTTGAGACTGTGGGGCGCCCCGTTGAGGCCCCGAGGAATATTAATGCTTTGGAGGAAGGAAATCTTGATGTGAAATATTTGTCCAGATGTGAGGCATGTTATATATACAAGGAAGCATTTTTAACTCCAATTGGAAGCATGATTCGCTCTGCGTTATTTGTACCCAGTTTCCTCGAGGAAATCACACGATTAGAAGTCTTGGTTAGAATGGTATGA 1251 0.5004 MGYLYLSCRAESAVSTSNSSKPTKDKEKGIKIQEFQYSDLEAATNGFSDRKLLGKGSHGYVYKAVVRGRPVAVKRPSRPNAVVPRPVSSSAPEIVTSEVDNEIDILSKIQSPRLVNLVGFTNDSRDRLLVVEFMSNGTLYDVLHSSPRPPNWGRRIRLALQTAKAIDTLHSSTPPVIHRDIKSANVLIDRSYNARLGDFGLALRGHVDDYRLRSTPPAGTMGYLDPCYVTPDNLSTKTDVFSFGILLLEIISGRKAIDITYSPPSIVDWAIPLIKKGKLLAVYDPRIAPPKDPLVRKHLAVIAAKCVRSCRERRPSMKEVVTWLCGLCKLVPLHSWNGFNNPCMMVETVGRPVEAPRNINALEEGNLDVKYLSRCEACYIYKEAFLTPIGSMIRSALFVPSFLEEITRLEVLVRMV 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3236 416 SMART serkin_6 47 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3236 416 SUPERFAMILY Protein kinase-like (PK-like) 25 324 IPR011009 -
Ssu3g3236 416 Gene3D Phosphorylase Kinase; domain 1 27 133 - -
Ssu3g3236 416 Pfam Protein tyrosine and serine/threonine kinase 51 322 IPR001245 GO:0004672|GO:0006468
Ssu3g3236 416 ProSiteProfiles Protein kinase domain profile. 47 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3236 416 PANTHER OS01G0750732 PROTEIN 1 347 - -
Ssu3g3236 416 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN 1 347 - -
Ssu3g3236 416 ProSitePatterns Protein kinases ATP-binding region signature. 53 74 IPR017441 GO:0005524
Ssu3g3236 416 Gene3D Transferase(Phosphotransferase) domain 1 134 332 - -
Ssu3g3236 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3236 Ssu-Chr3 88696376 88700037 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3236 3 324 Receptor kinase-like Gene Family AT3G59420 42.183 6.02e-76 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Ssu3g3236 PK_Tyr_Ser-Thr 2.9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3236 - - gmx:100805692 674.47