Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3224 ATGGAGAAGTACCTGAGAGAAAACTTTAACGTGCAGCCGAAGAATCCCTCCGAGGCGGCACTTCGCCGATGGAGATCCGCCGTCTCCGTCGTCAAGAACCCCCGCCGCCGCTTCCGCATGGTCGCCAATCTCGCCCAACGAGCCGACGCCGAACAAAAGCGCAAGAAGCTCCAGGAAAAGATACGGGTGGCTCTCTATGTGCAAAAAGCAGCGTTGCATTTTATTAACGGTATACACACTACATCGCTTTCATTGACCTTTTTGGCTATTCACTCGTTGTTCtgttacattttttcttttcctcataCAGCTGGGAGCCGAGGTGGTGGTTACATGCTCCCCAAAGAGATTCAGGAAGCAGGCTTCGGAATTGAGCCCGACGAATTAGCCTCCATTGTTCGATCCCATGACACCAAATGTTTAGAACATCATGAAGGAGTTGAAGGAGTAGCAAGGGATGTTCGTGTGTCATTGCAAGAGGGCGTTAATTCACTCGATGTTCAGCACAGACAAAATATCTATGGTTCTAACCGCCATACCGAGAAGCCCCCTAGAAGCTTTTGGATGTTCGTTTGGGATGCAATGCAGGACTTAACTCTAATTATCCTTATGGTATGTGCTTTGGTTTCAGTAGGTATTGGAATCTTAACTGAAGGTTGGCCAAAAGGTATGTACGATGGAGTGGGAATCATACTATGTATCATTTTAGTGGTCTTTGTCACTTCAATCAGTGACTATAAACAGTCTTTGCAATTTAAGGATTtggataaagaaaagaaaaatgtcagCATTCACGTTACAAGAGATGGTAGAAGACAAAAGGTTTCAATTCATGATCTAGTGGTAGGAGATATAGTCCACCTGTCAATTGGAGACATAGTTCCTGCAGATGGATTATTCCTATCAGGTTTTGGCTTATTAATAGATGAATCAAGTCTATCAGGTGAAAGTGAGGCTGTGAATGTTGATCAACAGAAGCCTTTTCTTCTATCCGGGACCACGGTGCAAGATGGGTCTGCTAAGATGCTGGTGACATCCGTTGGTATGAGGACTGAATGGGGAAGATTAATGGATACTCTGAACGAAGGGGGAGATGATGAAACACCTCTTCAGGTCAAACTAAATGGAGTTGCCACCATTATTGGAAAGATAGGCTTGGGTTTTGCCCTGCTGACATTCCTGGTTCTGACGGGCAGGTTTTTGTGGGAGAAAATAGCTCACCATGAGATCACAAAATGGTCCCTAAATGATGCATCTAACCTTCTGAATTTCTTTGCAACTGCTGTAATTATAATAGTTGTGGCAGTTCCCGAGGGGCTGCCTTTGGCAGTGACACTAAGCCTTGCATTTGCAATGAAGAAATTGATGAATGACAAGGCACTAGTCAGGCACCTCTCCGCATGTGAGACCATGGGTTCAGCTGGTTGTATTTGCACTGATAAAACGGGCACTTTGACAACAAATCACATGGTTGTAGACAAAATATGGATTTGCGGACAAACTAGGGCCATTAAAAGCGGCAACAGTGAAAATGTGTTAAAGCCCTTAGTTGCTGAACAGATATTTGATCTCCTTTTGCAATCCATATTCCAGAATACTGGCTCAGAGATAGTCAAAGCGCAAGATGGAAAGAACAAGATCATGGGTACACCCACAGAGTCCGCATTGCTTGAATTTGGCTTACTTTTGGGAGGTGATTCCAAGTTTTATAACGACAAGTATAAAATGGTGAAGGTTGAACCATTCAATTCAATCAAAAAAAAGATGTCAGTGCTGGTGGCTCTCCCCGAAGGCACCAACAACAAGTATCGAGCATTTTGTAAAGGAGCATCAGAAATAGTTGTGAAAATGTGTGACAAAGTTGTTAATGCAGACGGCAAAGTCGTCAATTTGAACGAACAACAAAGAAATAGCACCACAGAAGTTATCAATGGTTTTGCTTCTGAGGCTCTGAGAACACTCTGCATTGCCTTCAAGGATATTGAAGGATCTTCTGAAGGTGATAGTATTCCTGAGGATAAGTACACGTTAATAGCTATTATTGGGATCAAGGATCCAGTGAGGCCTGGGGTAAAAGAAGCTGTAAAGACTTGTTTAGAAGCTGGCATTACTGTTAGAATGGTAACTGGTGACAACATAAATACTGCTAAAGCAATAGCAAGAGAATGCGGCATATTGACAGATGGAATCGCTATAGAGGGACCAGATTTCCGGAACAAGACCCGACAAGAGATGGAGGAGATAATACCAAAAATACAGGTGATGGCCCGATCCTTGCCACTTGACAAACACACCTTAGTGACCCATTTGAGGAACGACTTAAATGAGATTGTGGCAGTAACTGGTGATGGGACCAATGATGCTCCAGCGTTGCACGAGGCTGATATTGGACTTGCTATGGGTATTGCAGGCACAGAGGTTGCAAAAGAGAATGCGGATGTGATTGTAATGGATGATAACTTCACAACCATAGTGAATGTTACCAGATGGGGCCGTGctgtttatattaatatacaaaagtttgTCCAGTTCCAGTTAACCGTTAATGTTGTAGCTCTCATGCTGAATTTTGTTTCAGCATGCGTGTCAGGCTCTGCTCCTCTTACGGCTGTTCAAATGCTTTGGGTAAACATGATCATGGACACTCTGGGCGCGTTGGCACTGGCTACAGAACCTCCTCATGATGGGCTGATGAAGAGGCCGCCTATTGGAAGGAACGCCAAATTCATCACCAGGGTCATGTGGAGGAACATAATTGGTCAGAGCATCTATCAAATTATTGTCCTTTTGGTTCTCAAATTTCGTGGGGAACAGATTCTCAAGCTCAATGGACCTGATGCAACCTTAGTTCTAAATACCGTCATATTCAACACCTTTGTATTTTGCCAGGTATTCAACGAGATAAACAGCCGTGACATGGAGAAGATTAATGTTTTCCAAGGCATGTTTAGCAGCTGGGTTTTTCTGATCGTCATGGCCGCAACCATATGCTTTCAAGCCATAATAGTTCAATATCTGGGTGCTTTTGCTCAAACAGTTCCACTGAGCCGGGAGTTGTGGTTAGCAAGTGTCATGATTGGTGTGGTAAGTTTAGTTGTAGCTGTTGTCCTAAAGTGCATTCCAGTTCCATCAAGCAGCTACGTCGCCACGCATCATGATGGTTACGAGCAGCTCCCCACTGGACCAGAGCTGGCATGA 3198 0.4337 MEKYLRENFNVQPKNPSEAALRRWRSAVSVVKNPRRRFRMVANLAQRADAEQKRKKLQEKIRVALYVQKAALHFINGIHTTSLSLTFLAIHSLFCYIFSFPHTAGSRGGGYMLPKEIQEAGFGIEPDELASIVRSHDTKCLEHHEGVEGVARDVRVSLQEGVNSLDVQHRQNIYGSNRHTEKPPRSFWMFVWDAMQDLTLIILMVCALVSVGIGILTEGWPKGMYDGVGIILCIILVVFVTSISDYKQSLQFKDLDKEKKNVSIHVTRDGRRQKVSIHDLVVGDIVHLSIGDIVPADGLFLSGFGLLIDESSLSGESEAVNVDQQKPFLLSGTTVQDGSAKMLVTSVGMRTEWGRLMDTLNEGGDDETPLQVKLNGVATIIGKIGLGFALLTFLVLTGRFLWEKIAHHEITKWSLNDASNLLNFFATAVIIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSAGCICTDKTGTLTTNHMVVDKIWICGQTRAIKSGNSENVLKPLVAEQIFDLLLQSIFQNTGSEIVKAQDGKNKIMGTPTESALLEFGLLLGGDSKFYNDKYKMVKVEPFNSIKKKMSVLVALPEGTNNKYRAFCKGASEIVVKMCDKVVNADGKVVNLNEQQRNSTTEVINGFASEALRTLCIAFKDIEGSSEGDSIPEDKYTLIAIIGIKDPVRPGVKEAVKTCLEAGITVRMVTGDNINTAKAIARECGILTDGIAIEGPDFRNKTRQEMEEIIPKIQVMARSLPLDKHTLVTHLRNDLNEIVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIVMDDNFTTIVNVTRWGRAVYINIQKFVQFQLTVNVVALMLNFVSACVSGSAPLTAVQMLWVNMIMDTLGALALATEPPHDGLMKRPPIGRNAKFITRVMWRNIIGQSIYQIIVLLVLKFRGEQILKLNGPDATLVLNTVIFNTFVFCQVFNEINSRDMEKINVFQGMFSSWVFLIVMAATICFQAIIVQYLGAFAQTVPLSRELWLASVMIGVVSLVVAVVLKCIPVPSSSYVATHHDGYEQLPTGPELA 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3224 1065 PANTHER CATION TRANSPORTING ATPASE 3 1049 - -
Ssu3g3224 1065 SUPERFAMILY Calcium ATPase, transmembrane domain M 143 1042 IPR023298 -
Ssu3g3224 1065 SUPERFAMILY Calcium ATPase, transduction domain A 263 359 IPR008250 -
Ssu3g3224 1065 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 138 1042 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Ssu3g3224 1065 CDD P-type_ATPase_Ca_PMCA-like 167 914 - -
Ssu3g3224 1065 SFLD p-type atpase 460 833 IPR044492 -
Ssu3g3224 1065 Pfam Cation transporting ATPase, C-terminus 866 1039 IPR006068 -
Ssu3g3224 1065 Coils Coil 40 60 - -
Ssu3g3224 1065 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 230 501 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu3g3224 1065 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 746 869 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu3g3224 1065 SMART Cation_ATPase_N_a_2 141 215 IPR004014 -
Ssu3g3224 1065 SUPERFAMILY HAD-like 477 886 IPR036412 -
Ssu3g3224 1065 ProSitePatterns E1-E2 ATPases phosphorylation site. 480 486 IPR018303 -
Ssu3g3224 1065 Gene3D - 488 686 IPR023299 GO:0000166
Ssu3g3224 1065 Gene3D - 161 361 - -
Ssu3g3224 1065 Pfam haloacid dehalogenase-like hydrolase 476 795 - -
Ssu3g3224 1065 Pfam E1-E2 ATPase 263 456 - -
Ssu3g3224 1065 Pfam Cation transporter/ATPase, N-terminus 142 210 IPR004014 -
Ssu3g3224 1065 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 48 IPR024750 GO:0005516
Ssu3g3224 1065 Gene3D - 193 1040 - -
Ssu3g3224 1065 Gene3D - 475 826 IPR023214 -
Ssu3g3224 1065 PRINTS H+-transporting ATPase (proton pump) signature 781 797 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu3g3224 1065 PRINTS H+-transporting ATPase (proton pump) signature 813 838 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu3g3224 1065 PRINTS H+-transporting ATPase (proton pump) signature 639 657 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu3g3224 1065 Gene3D - 16 76 - -
Ssu3g3224 1065 PRINTS P-type cation-transporting ATPase superfamily signature 309 323 - -
Ssu3g3224 1065 PRINTS P-type cation-transporting ATPase superfamily signature 478 492 - -
Ssu3g3224 1065 PRINTS P-type cation-transporting ATPase superfamily signature 679 690 - -
Ssu3g3224 1065 PRINTS P-type cation-transporting ATPase superfamily signature 781 800 - -
Ssu3g3224 1065 PRINTS P-type cation-transporting ATPase superfamily signature 701 711 - -
Ssu3g3224 1065 PRINTS P-type cation-transporting ATPase superfamily signature 805 817 - -
Ssu3g3224 1065 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 484 691 IPR023299 GO:0000166
Ssu3g3224 1065 SFLD C1.7: P-type atpase like 460 833 - -
Ssu3g3224 1065 PANTHER CALCIUM-TRANSPORTING ATPASE 3 1049 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3224 Ssu-Chr3 88401842 88423711 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3224 57 1062 Primary Pumps ATPases AT3G57330 68.818 0.0 1398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3224 K01537 - gmx:100801260 1843.17