Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3223 ATGGGGGAGTCATGCGCGCTGTGTGAGAATAGGGCCGTGATGCTGTGCGACTCGGACCAGGCTAAGCTATGCTGGGACTGCGACGAGAAAGTTCACAGCGCCAATTTCTTGGTGGCCAAGCATTCGCGGGTCCTTCTGTGTCGTTTATGCCATTCCCCCACTCCGTGGAAGGCCTCGGGCGCGAAACTCACACTCACTGTGTCGTTTTGTCACCGTTGCGTCGCGGATCGACACGCGAGGTGGAACCCATTGGTGAATAATGTTCAACAACATTGTGATTATGTGGAGGATGATGGTGAACATGGGTCTGATAATGTTTATGATGGTGATGAAAAAGAGGATGAGGAAGGGGAGAATCAGGTGGCTCCAATGTCCTCTGGTTCTGCCACGTCACCACCCAGTGGTGCCAGTTTAGCATTGAAGCGACTAAGAAATGACTCTTTTTCTGTCGATTCCCATGATGAGACAGCGTGTTCTTCATCTGAGATGCTTAGTGCTACATTGCCCAGTAGTGATCAATCAACCTCTGCACACCAATCCTTGTCATCTCAGCAAGAAGCTGACGAGGCAGGTGTGGAATCCACCTTCACAAGTGCTGAAACCACAGCGGTGCGTAACATTGAACTGGGGCATTTCATTGAACACCTGCAAGAAGGCTTTGGCGTCGCCGAGGTTGGATTAAGAGCAAGCAGTGGTTTAAGAGGAGCAGCAGGAGTGCCCCACCGTTTCAGAGTAGgagACAATCCGAACGCCTTCTCTAAAGCCTGCCTTGCCTACCAGTTCCCTAACCATCATAAGGGTAATTTATGA 810 0.5062 MGESCALCENRAVMLCDSDQAKLCWDCDEKVHSANFLVAKHSRVLLCRLCHSPTPWKASGAKLTLTVSFCHRCVADRHARWNPLVNNVQQHCDYVEDDGEHGSDNVYDGDEKEDEEGENQVAPMSSGSATSPPSGASLALKRLRNDSFSVDSHDETACSSSEMLSATLPSSDQSTSAHQSLSSQQEADEAGVESTFTSAETTAVRNIELGHFIEHLQEGFGVAEVGLRASSGLRGAAGVPHRFRVGDNPNAFSKACLAYQFPNHHKGNL 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3223 269 MobiDBLite consensus disorder prediction 121 135 - -
Ssu3g3223 269 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Ssu3g3223 269 PANTHER B-BOX TYPE ZINC FINGER PROTEIN 4 183 - -
Ssu3g3223 269 MobiDBLite consensus disorder prediction 160 196 - -
Ssu3g3223 269 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 183 - -
Ssu3g3223 269 MobiDBLite consensus disorder prediction 95 137 - -
Ssu3g3223 269 CDD Bbox1_BBX-like 5 46 - -
Ssu3g3223 269 SMART bboxneu5 1 46 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3223 Ssu-Chr3 88374230 88377475 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3223 1 79 C2C2-CO-like Transcription Factor Family AT4G27310 62.025 1.91e-28 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu3g3223 zf-B_box 1.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3223 - - gmx:100818267 259.225