Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3220 atggCCAAAAAGAAGAGCTGGTTTAGTCTGGTGAAGAGGCTCTTTATATGGGACACACATTCCACACAAGAGAAGaaggagaaaagaaggaaaTGGATATTTGGAAGGCTAAAGAGCAAGAGATTACCTTCAATTACAGCTCCACTTCCATCAAAAGAAACAACACTAAGTGAAGCAGAGGAAGAACAGAGCAAGCATGCTTTAACAGTGGCCATTGCCTCAGCAGCTGCTGCTGAAGCTGCTGTTACTGCTGCTCAGGCTGCTGCTGAGGTTGTTCGCCTCACTGGGGTCTCACAATCTGCTCTTCAACGCAAAGAAAACTCAGAAGAATCTCAACCTGTTAAAACTGGGAATGGTGCTCCTCAAACCACATACCAGTGCCAGAGGGAGATTAAAGAATCTGCTGCAGCCACCAAAATTCAAACTGCATTTCGGGGTTACCTGGCAAGGAAGGCTTTGAGGGCATTGAAGGGAATAGTGAAGCTTCAAGCTATCATTCGTGGCAGAGCAGTACGACGCCAAGCTATGAGTACTCTTAAGTGCTTGCAGTCCATTGTGAGTATCCAGTCACAGGTCTGTGCAAGGAGGCTCCAAATGGTTGAAGGGAGATGTGATTATGCTGAAAATGAAGAGATGCAAGATTCTAGAGACAAGATTATTAGGATGGACTCAAACAGTGAAAGAAAGTGGGATGAAAGCACTGTATTGAAGGAAGAGGTAGACACCTCTTGCATAAGCACGAAAGAAACAGTTCtcaagagagaaagaataaaagaatactcATTTAACCATAGAAGGTCAGCAGAGTCAGAAAGAAGTAAAGTAAATGGAAGATGGAGGTACTGGCTTGAGCAGTGGGTAGATACACAACTTTCAAAGAGTAAAGAACTTGAAGATTTAGACTCAATTTTTAGCTCACATTCTAGGGCTGGGGAGGAATATGGAGGAAGGCAACTTAAGCTGAGAAGTATTCATAGACAATATCCAGTTGAAGGATTAGATTCTCCAATACTTGGTTCAAGAAGATCTTTTCCTCATAGGAGGCAGAGTTCAGTGGGAGAAGATCACTCATTTTCAAGCTCTCCTGCAACTCCAGCTTACATGGCTGCAACAGAATCAGCAAAAGCAAAAGCAAGATCAACAAGCTCCCCAAAAGTAAGGACGGGGGGGAATGTGGACATGAACTCTGATAGCTACTCACCATGCAAGAAAAAGCTATTCATTGCATCTTCTATTAACAGTGAAGTGCTTAATAGTGGTAGGATTGGCAGCAAGCTCGGTGGTAACCAGCAAAGATCTCCAAGCTTTAAGGGGCTTTCAATGCCTATAAAATCAAGCCGAACTATCAAGGATCTCAGTATTAATTCAGATTGCTCACTGCCTAATTGGGACCGACAAGGTTCCTTCAAATGA 1413 0.4211 MAKKKSWFSLVKRLFIWDTHSTQEKKEKRRKWIFGRLKSKRLPSITAPLPSKETTLSEAEEEQSKHALTVAIASAAAAEAAVTAAQAAAEVVRLTGVSQSALQRKENSEESQPVKTGNGAPQTTYQCQREIKESAAATKIQTAFRGYLARKALRALKGIVKLQAIIRGRAVRRQAMSTLKCLQSIVSIQSQVCARRLQMVEGRCDYAENEEMQDSRDKIIRMDSNSERKWDESTVLKEEVDTSCISTKETVLKRERIKEYSFNHRRSAESERSKVNGRWRYWLEQWVDTQLSKSKELEDLDSIFSSHSRAGEEYGGRQLKLRSIHRQYPVEGLDSPILGSRRSFPHRRQSSVGEDHSFSSSPATPAYMAATESAKAKARSTSSPKVRTGGNVDMNSDSYSPCKKKLFIASSINSEVLNSGRIGSKLGGNQQRSPSFKGLSMPIKSSRTIKDLSINSDCSLPNWDRQGSFK 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3220 470 Pfam Protein of unknown function (DUF4005) 350 420 IPR025064 -
Ssu3g3220 470 PANTHER IQ-DOMAIN 11 5 456 - -
Ssu3g3220 470 MobiDBLite consensus disorder prediction 375 394 - -
Ssu3g3220 470 ProSiteProfiles IQ motif profile. 157 184 IPR000048 GO:0005515
Ssu3g3220 470 MobiDBLite consensus disorder prediction 421 442 - -
Ssu3g3220 470 Gene3D - 131 184 - -
Ssu3g3220 470 MobiDBLite consensus disorder prediction 102 122 - -
Ssu3g3220 470 PANTHER IQ-DOMAIN 5-RELATED 5 456 - -
Ssu3g3220 470 SMART iq_5 132 154 IPR000048 GO:0005515
Ssu3g3220 470 Pfam IQ calmodulin-binding motif 135 154 IPR000048 GO:0005515
Ssu3g3220 470 ProSiteProfiles IQ motif profile. 133 161 IPR000048 GO:0005515
Ssu3g3220 470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 175 IPR027417 -
Ssu3g3220 470 MobiDBLite consensus disorder prediction 336 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3220 Ssu-Chr3 88338584 88340786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3220 1 470 IQD Protein Family AT5G13460 47.000 2.83e-115 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3220 - - gmx:100800192 799.66