Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3213 atggtatATTGTGATCACTGTTGGAAAAACGTTTCTGGGGTGCGAGTCGATGATGGTCCCTTATGTTGTAGCGAATGTGGGAAGGTGTTGGAAGACTACCATTTTACCGAGGAGCCTACCTTTGTGAAAAACACGTCTGGGCAGAGCAGATTATCAGGCCATTATGTAAGAACAGTTCAAACTTatgatgatttaaaatatttaagttataaccTTGGAGTGAATGATGATAGTATGGCCAACCAAGCTTTGAAGTTCTATAGAATAGCACTTGAGCGAAATTTTACCAGGGGACGTAAATCAGAACAAGTACAGGCTGCTTGTCTCTATATTGCATTCCGGCACAATGATAAACCATACCTTCttattgatttttcaatttgtttaaaGACAAATGTTTATGTGCTAGGTGCAGTATTTTTGCAGCTTTGTAAAGTATTAAGCCTCGAAGAGCACCCAATTGTTCAGAAACCTATTGATCCcagtctttttatttataaatatacaaataAGTTGTTAAAGAAGAGGAATGTGCTTGTTTCTGAAACTGCACTGAATATTATTGCCAGCATGAAACGAGACTGGATGCAGACAGGGAGGAAGCCTAGCGGATTATGTGGTGCAGCATTGTACATATCTGCTCTCGCACATGGTGAAAAGTGCTCTAAGTCAGATATTCTAAGGATTGTCCATATATGTGATGCAACATTGACTAAGCGGTTGGTAGAGTTTGAGAATACCGAGTCTGCTAGCTTGACAGTTGAGGAGTTGAATACGATGGTAAAAGAGCAtgagaaaaatcaaattaaaataccagATGATGAACTGAACAAACGTACTTTAAAGGATCTACTATGTGAACACAAGGATACTGCTGTGCCCTATTTTGCACTTGGATTATGTGAAACATGTTACAAGGATTTTGATAAACTCTCTGGTGGACTTGGTGGTGGTTTGGATCCTCCCGCATTCCAACGGGCTGAGAGCGAGAGAATTACAAAATCATATTCTAATGCCAATAGATCATATGATTCAGGGAAAGCATCAAATGGTGCATGTGAGAGTCAAATAAAAGAATCACATGACTCTGGGCCTGAAAGTATTAGGGCTAATGTACATGTGACCATTAAAGATGGTGAGCATGATGAGTCACATGAAGATGATATGAACACGGAAAATCATGATGAATCAGAAAGTCTCTCTGATATTGATGTCCAGGAGATTGACAGTTGTCTTCTCAATGCGGAGGAAACACAATTCCGCACGATTATATGGGAAAACATGAATAAAGATTATCTTGAGGAACAAGCAGCCAAGCAAGCAGCTGTGGCAAAGTCCACAAAGGAAATCAAACCTCGACGAGCTCAAGAGGCAAAAAACTTGGGTCCAGCTCAATCTCCTTTGGAGGCCTGTCACCGAACGCTTGAAAAAAAGCGGGTCAGAGTCAACGAGGATGCCTTGAAGagattatttgataaacatGATGCTGCAGAGAATCCCAAGAAAGTACGATTTGAGCTACCCTTTGTTGATTTTGAGTCAAAGTTAGAGGACAAGATAAAGGATGATGAAGAGGGATCAATGGACGAATTTGAGGGTGATGATATGAATGGAGGATACGAAAATACTTTGTATCAAGAAAATGCATATGAGACATATGACTATGACTATGACTATGACTATGAGCATGATGGTTATAGCTATGATCGTTAA 1713 0.3806 MVYCDHCWKNVSGVRVDDGPLCCSECGKVLEDYHFTEEPTFVKNTSGQSRLSGHYVRTVQTYDDLKYLSYNLGVNDDSMANQALKFYRIALERNFTRGRKSEQVQAACLYIAFRHNDKPYLLIDFSICLKTNVYVLGAVFLQLCKVLSLEEHPIVQKPIDPSLFIYKYTNKLLKKRNVLVSETALNIIASMKRDWMQTGRKPSGLCGAALYISALAHGEKCSKSDILRIVHICDATLTKRLVEFENTESASLTVEELNTMVKEHEKNQIKIPDDELNKRTLKDLLCEHKDTAVPYFALGLCETCYKDFDKLSGGLGGGLDPPAFQRAESERITKSYSNANRSYDSGKASNGACESQIKESHDSGPESIRANVHVTIKDGEHDESHEDDMNTENHDESESLSDIDVQEIDSCLLNAEETQFRTIIWENMNKDYLEEQAAKQAAVAKSTKEIKPRRAQEAKNLGPAQSPLEACHRTLEKKRVRVNEDALKRLFDKHDAAENPKKVRFELPFVDFESKLEDKIKDDEEGSMDEFEGDDMNGGYENTLYQENAYETYDYDYDYDYEHDGYSYDR 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3213 570 Gene3D - 57 152 - -
Ssu3g3213 570 MobiDBLite consensus disorder prediction 445 466 - -
Ssu3g3213 570 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 1 495 IPR029529 GO:0000126|GO:0000995|GO:0006383
Ssu3g3213 570 MobiDBLite consensus disorder prediction 336 368 - -
Ssu3g3213 570 CDD CYCLIN 159 245 IPR013763 -
Ssu3g3213 570 CDD CYCLIN 76 125 IPR013763 -
Ssu3g3213 570 SUPERFAMILY Cyclin-like 159 257 IPR036915 -
Ssu3g3213 570 MobiDBLite consensus disorder prediction 381 400 - -
Ssu3g3213 570 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 495 IPR000812 GO:0006352|GO:0070897
Ssu3g3213 570 Gene3D Single helix bin 393 442 - -
Ssu3g3213 570 Gene3D - 160 253 - -
Ssu3g3213 570 Pfam Brf1-like TBP-binding domain 401 492 IPR011665 -
Ssu3g3213 570 MobiDBLite consensus disorder prediction 336 357 - -
Ssu3g3213 570 SUPERFAMILY Cyclin-like 67 150 IPR036915 -
Ssu3g3213 570 SMART cyclin_7 163 246 IPR013763 -
Ssu3g3213 570 SMART cyclin_7 63 145 IPR013763 -
Ssu3g3213 570 MobiDBLite consensus disorder prediction 518 541 - -
Ssu3g3213 570 Pfam Transcription factor TFIIB repeat 156 246 IPR013150 GO:0017025
Ssu3g3213 570 Pfam Transcription factor TFIIB repeat 59 144 IPR013150 GO:0017025
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3213 Ssu-Chr3 88230481 88259255 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3213 1 478 Inorganic Solute Cotransporters AT2G01280 40.900 9.39e-109 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3213 K15196 - gmx:100789154 622.468