Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3212 ATGAACTGGGAACGCAAGGGCATACGCCTAGTCCATCTTCTTAAGCACTGTGCCAAGCTTACTGAATCGGGAAACTACTTTGATGCAGATATTGCACTCTACCGTCTCTCTAGCCTTGCTTCCCCCGATGGTGATTCATTACAGCGCGTTGCGACTCATTTCAGTGAGGCACTAGCCTGTTGCCAAGTGGCCAAAAATCTGCGTGGTGTACCCAAAGTTCTGCGTTTGGTAAAAACATTATCAACCCCGGAACAACAACTTGTTAAGCAACTATTCTTCGATTTCTATCCCTTCTTAAATATCGCATACACGATCACAAATCGGACCATTATTGAAGCCATGGAAGGGGAAACAACGATTAATGTCCTTGATCTCAGTCCATCATCCGGCGCTGTTCAGTGGATCAGACTCATGCAGGGTTTAAAAGAGCGTTTTCCAAACACACCGTGTCTGAAAATCACTGTCACAGCCATACACGAGAAGAAGGAGGTGTTAGAGCAAATGGGGTTGCATCTGGGAGTTGAAGCTGAAAGGCTGCATTTCCATTTCCAATTCAATCCTGTTGTGAGCAGTTTGGAGAGCCTTGACCCTGAGACATTGCCTATCAAGAAAGGAGAGCCTCTTGCAATTAGCTGTGTGCTTCAGCTTCACTCTCTTCTGGCTACTGATGATGATAATGCAAAACAGAACATGAAGAAGGTCAATCCAAGTCCTGATTCAGCACTGTCACCTTTTTCTCCGTGTCCATCACGTAAGATGGATTGTTTTCTCTATGGCCTGTGGAAGCTCCAACCCAAAGTGATGGTGATCACTGAGCAAGAATCAAATGTCAATGGGTCTAGTCTGACACAGAGGGTGGACAGGGCTTTGAACTTCTATGGTGCACTGTTTGATTGCTTGGAAGCTTCCATTTCCAGAACATTAGTATGGAGGACCCTATTTGAGAAGATGCTACTTGGGGAAGAGATAAAGAACATTGTTGCATGTGAAGGAGTTGAGAGAAAGGAGAGGCATGAGAAACTTGAGACATGGATTCCAAGGCTAGAATTGGCAGGGTTTAGGAGGGTACCTATCAGCTCCAATGGTATTTGGCTGGCAACTAGGATGTTGCAAAACTATGTACCTGGATACAACATCCGTCAGGAGAACAAGTGTTTGTTTATCTATTGGAAGGAAATTCCTCTCTTTTCAGTTTCGGCCTGGAAGTTTTAG 1212 0.4488 MNWERKGIRLVHLLKHCAKLTESGNYFDADIALYRLSSLASPDGDSLQRVATHFSEALACCQVAKNLRGVPKVLRLVKTLSTPEQQLVKQLFFDFYPFLNIAYTITNRTIIEAMEGETTINVLDLSPSSGAVQWIRLMQGLKERFPNTPCLKITVTAIHEKKEVLEQMGLHLGVEAERLHFHFQFNPVVSSLESLDPETLPIKKGEPLAISCVLQLHSLLATDDDNAKQNMKKVNPSPDSALSPFSPCPSRKMDCFLYGLWKLQPKVMVITEQESNVNGSSLTQRVDRALNFYGALFDCLEASISRTLVWRTLFEKMLLGEEIKNIVACEGVERKERHEKLETWIPRLELAGFRRVPISSNGIWLATRMLQNYVPGYNIRQENKCLFIYWKEIPLFSVSAWKF 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3212 403 ProSiteProfiles GRAS family profile. 1 402 IPR005202 -
Ssu3g3212 403 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 402 IPR005202 -
Ssu3g3212 403 Pfam GRAS domain family 10 402 IPR005202 -
Ssu3g3212 403 PANTHER SCARECROW-LIKE PROTEIN 3 6 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3212 Ssu-Chr3 88217024 88218235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3212 4 402 GRAS Transcription Factor Family AT1G50420 44.954 3.42e-116 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu3g3212 GRAS 1.9e-95 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3212 - - vra:106778126 601.282